Browse Element(s) Details


Os.14745.1.S1_at

Description gb:AK062734.1
DB_XREF= gi:32972752
TID=Os.14745.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.14745 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-106-E08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-106-E08, full insert sequence.
FL= gb:AK062734.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g4250011/11Dirigent-like protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g42470NANA11+25080955..25081414hypothetical protein
LOC_Os11g42480OsAffx.31441.1.S1_x_at11/1111+25082609..25084015Transferase family protein, expressed
LOC_Os11g42490Os.27592.2.S1_at11/1111+25088535..25090369retrotransposon protein, putative, unclassified, expressed
LOC_Os11g42490Os.27592.1.A1_at10/1111+25088535..25090369retrotransposon protein, putative, unclassified, expressed
LOC_Os11g42500Os.14745.1.S1_at11/1111+25092754..25093519Dirigent-like protein, expressed
LOC_Os11g42510Os.15671.1.A2_at11/1111+25095086..25102134tyrosine/nicotianamine aminotransferases family protein, expressed
LOC_Os11g42510Os.38669.1.A1_s_at11/1111+25095086..25102134tyrosine/nicotianamine aminotransferases family protein, expressed
LOC_Os11g42520OsAffx.31442.1.S1_at11/1111+25104891..25107597hypothetical protein
LOC_Os11g42530OsAffx.7388.1.S1_at10/1111+25112028..25112839hypothetical protein
LOC_Os11g42540Os.26771.1.A1_at11/1111+25113151..25116027oxidoreductase, aldo/keto reductase family protein, expressed
LOC_Os11g42550Os.7850.1.S1_at11/1111+25116419..25117263Dirigent-like protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0009807biological_processlignan biosynthesis
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.14745.1.S1_at--556--4531Chr11:25092933..25092957 (25 bp)
GCCCGCGCGGCATGTTCGGGAACAC
LOC_Os11g42500
Os.14745.1.S1_at--1103--7811Chr11:25093066..25093090 (25 bp)
GGTCACCATGAACGTCGTTCTCAGC
LOC_Os11g42500
Os.14745.1.S1_at--455--9131Chr11:25093209..25093233 (25 bp)
TGCTGTGGAGGACCATCCGCCCTGA
LOC_Os11g42500
Os.14745.1.S1_at--1112--971Chr11:25093294..25093318 (25 bp)
AGGATGATGATCTGTCGAAAACGGA
LOC_Os11g42500
Os.14745.1.S1_at--80--5531Chr11:25093310..25093334 (25 bp)
GAAAACGGACACGTCATTCGCCCAG
LOC_Os11g42500
Os.14745.1.S1_at--633--9591Chr11:25093323..25093347 (25 bp)
TCATTCGCCCAGTCAGCATCTGTGT
LOC_Os11g42500
Os.14745.1.S1_at--885--10111Chr11:25093355..25093379 (25 bp)
TATGTGTGTGACGTGGCGTGTTCTT
LOC_Os11g42500
Os.14745.1.S1_at--1046--4651Chr11:25093370..25093394 (25 bp)
GCGTGTTCTTGCACAGGTGTCGTAC
LOC_Os11g42500
Os.14745.1.S1_at--629--8711Chr11:25093387..25093411 (25 bp)
TGTCGTACCGGTAAAGGCTTATCCT
LOC_Os11g42500
Os.14745.1.S1_at--195--931Chr11:25093401..25093425 (25 bp)
AGGCTTATCCTTGTGGTGTGTGTGT
LOC_Os11g42500
Os.14745.1.S1_at--218--9791Chr11:25093440..25093464 (25 bp)
TAAGCTTGACATGGGCGAACCTGAT
LOC_Os11g42500
Target Sequence 
GCCCGCGCGGCATGTTCGGGAACACGGTGGTGATGGACGACGTGCTGACGGAGGGACCCGCGGCGACGTCGTCGGTGCTG
GGGCGCGCCCAGGGGCAGTACATCGTGGCGTCGACGGGGAGCATGGACCTGATGGTCACCATGAACGTCGTTCTCAGCTC
CGGCCCGTTCGCCGGCAGCTCGGTGACCGTCGTCGGGCGCGACGANACCGGCGCGGCGGTGCGGGAGCTGACGGTGGTGG
GGGGCACGGGGCAGTTCAGGATGGCGAGAGGGTACGTGCTGTGGAGGACCATCCGCCCTGACCTGCTCGAGCTCGACGTN
TACGTTAACCCGTAGAAAAGATAAGAGAGACGATGACGATGAGGATGATGATCTGTCGAAAACGGACACGTCATTCGCCC
AGTCAGCATCTGTGTNCGTGTGTATGTGTGTGACGTGGCGTGTTCTTGCACAGGTGTCGTACCGGTAAAGGCTTATCCTT
GTGGTGTGTGTGTNGTCCGGTGAAAAAANTAAGCTTGACATGGGCGAACCTGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.14745.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis