Browse Element(s) Details


Os.14771.1.S1_at

Description gb:AK061209.1
DB_XREF= gi:32971227
TID=Os.14771.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.14771 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:006-210-C05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:006-210-C05, full insert sequence.
FL= gb:AK061209.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g191494/11
LOC_Os09g191902/11retrotransposon protein, putative, Ty1-copia subclass
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g19110NANA11+10874212..10881761retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g19120NANA11+10884826..10886991retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g19130Os.17538.1.S1_at11/1111+10888771..10893491expressed protein
LOC_Os11g19140OsAffx.18938.1.S1_at11/1111+10895761..10899895hypothetical protein
LOC_Os11g19140OsAffx.13740.1.S1_at1/1111+10895761..10899895hypothetical protein
LOC_Os11g19149Os.14771.1.S1_at4/1111+10903553..10903828NA
LOC_Os11g19149OsAffx.28888.1.S1_x_at1/1111+10903553..10903828NA
LOC_Os11g19160Os.52968.1.S1_at11/1111+10913022..10917118beta-D-xylosidase, putative, expressed
LOC_Os11g19160OsAffx.2931.1.S1_at1/1111+10913022..10917118beta-D-xylosidase, putative, expressed
LOC_Os11g19170OsAffx.31055.1.S1_at10/1111+10925903..10926280hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.14771.1.S1_at--261--91Chr11:10903467..10903491 (25 bp)
ATTCGGCCGTGCTTGAGACCGGGTC
NONE
Os.14771.1.S1_at--677--7691Chr11:10903597..10903621 (25 bp)
GGGTACATGAGCTCAAGCTTGCCAT
LOC_Os11g19149
Os.14771.1.S1_at--352--8991Chr11:10903743..10903764 (22 bp)
TGAAGCCGGTGCAATTCTTCTCCAG
LOC_Os11g19149
Os.14771.1.S1_at--440--4532Chr11:10903780..10903804 (25 bp)
GCCCCTTCTGCATCTCGATGTGGAT
LOC_Os11g19149
Os.14771.1.S1_at--17--7512Chr11:10903799..10903823 (25 bp)
GTGGATGGGTTCAGTGGCCTCTTAC
LOC_Os11g19149
Os.14771.1.S1_at--246--4811Chr11:10903855..10903879 (25 bp)
GCTCTTCATGGCGTGGCAAACCAGC
NONE
Os.14771.1.S1_at--178--7551Chr11:10903910..10903934 (25 bp)
GTGGCCTGACGATGGCTCAAAGCAG
NONE
Os.14771.1.S1_at--201--2091Chr11:10903936..10903960 (25 bp)
ACATAGCGCCAGATTTGGTCAAGCC
NONE
Os.14771.1.S1_at--1057--3431Chr11:10903964..10903988 (25 bp)
CAGATTTTCCCTTTACATGGTGATA
NONE
Os.14771.1.S1_at--81--2091Chr11:10904030..10904054 (25 bp)
ACATTTCAGTGTTGGTATCGTTGCA
NONE
Os.14771.1.S1_at--655--10111Chr11:10904077..10904101 (25 bp)
TATGGTTCACATGTGCAGCTGCCCA
NONE
Target Sequence 
ATTCGGCCGTGCTTGAGACCGGGTCGGTGCGGCGCTTCCTCGCGGTGGCTGGGCAGCGGGCCCGCGGCGGTGCGGTGGCG
GTCGCCATGGACGCGCTGCTGTTCGAGCACCTGCTGTGGCTGCAGGCGGTGGGTACATGAGCTCAAGCTTGCCATGAAGC
CGGTGCAATTCTTCTCCAGCTCCAGTGGGCTGGCGCCCCTTCTGCATCTCGATGTGGATGGGTTCAGTGGCCTCTTACCC
TAATCCCCCACCTCNGTGCTCTTTTCTCNCGCTCTTCATGGCGTGGCAAACCAGCGCCCAGCGGTGCCGCCGTGCTGCGC
GTGTNGGTGGCCTGACGATGGCTCAAAGCAGAACATAGCGCCAGATTTGGTCAAGCCNCTCCAGATTTTCCCTTTACATG
GTGATAAAACTAGCTATAATGGTTGTATTTTTTTGGTCNGAACNTGCAAACATTTCAGTGTTGGTATCGTTGCATGAATT
TTGTTTACGAATGTTCTATGGTTCACATGTGCAGCTGCCCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.14771.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis