Browse Element(s) Details


Os.14817.1.S1_a_at

Description gb:AK067203.1
DB_XREF= gi:32977221
TID=Os.14817.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.14817 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) hypothetical protein (OSJNBa0055O03.5), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013095N21, full insert sequence.
FL= gb:AK067203.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3686011/11CRS1/YhbY domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g36839NANA10+19393048..19393293NA
LOC_Os10g36848Os.9727.1.S1_at11/1110+19398602..19405331Cytochrome P450 84A1, putative, expressed
LOC_Os10g36848OsAffx.28081.1.S1_x_at1/1110+19398602..19405331Cytochrome P450 84A1, putative, expressed
LOC_Os10g36860Os.14817.1.S1_a_at11/1110+19417567..19419962CRS1/YhbY domain containing protein, expressed
LOC_Os10g36870Os.3011.1.S1_at11/1110+19421965..19425476SH3 domain-containing protein 3, putative, expressed
LOC_Os10g36880Os.38394.1.S1_at11/1110+19427099..19438211Kinesin heavy chain, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.14817.1.S1_a_at--501--1911Chr10:19417999..19418023 (25 bp)
ACGTGATACTACAACTTGAGGAGTC
LOC_Os10g36860
Os.14817.1.S1_a_at--8--991Chr10:19417981..19418005 (25 bp)
AGGAGTCAACCGGATCCATTGCTGT
LOC_Os10g36860
Os.14817.1.S1_a_at--832--5851Chr10:19417955..19417979 (25 bp)
GACCAAATTGGTCGATCTGTCATTC
LOC_Os10g36860
Os.14817.1.S1_a_at--393--6411Chr10:19417942..19417966 (25 bp)
GATCTGTCATTCTATATCGTCCTAG
LOC_Os10g36860
Os.14817.1.S1_a_at--4--231Chr10:19417929..19417953 (25 bp)
ATATCGTCCTAGCACCAGTAAGATG
LOC_Os10g36860
Os.14817.1.S1_a_at--558--1431Chr10:19417842..19417866 (25 bp)
AGAACAACCTAGAAGCAGCACAAGC
LOC_Os10g36860
Os.14817.1.S1_a_at--687--2271Chr10:19417805..19417829 (25 bp)
AAATCTGGAGGAGCATTTAGGCCAC
LOC_Os10g36860
Os.14817.1.S1_a_at--398--10251Chr10:19417790..19417814 (25 bp)
TTTAGGCCACAACAGAAGAGAAGAC
LOC_Os10g36860
Os.14817.1.S1_a_at--402--151Chr10:19417764..19417788 (25 bp)
ATTAGCATCTAAGGAATCGTCGTAT
LOC_Os10g36860
Os.14817.1.S1_a_at--512--7571Chr10:19417739..19417763 (25 bp)
GGGCGAAGATAGATGCCACATTCAA
LOC_Os10g36860
Os.14817.1.S1_a_at--600--4371Chr10:19417724..19417748 (25 bp)
CCACATTCAATCCTTCATCTTGTTT
LOC_Os10g36860
Target Sequence 
ACGTGATACTACAACTTGAGGAGTCAACCGGATCCATTGCTGTTGACCAAATTGGTCGATCTGTCATTCTATATCGTCCT
AGCACCAGTAAGATGAAAAAGAGAGAAGAAAGTGCTAGGAATAGAACAAGATTTGTAAGATCTAGAGAACCATCAGAAGA
ACAACCTAGAAGCAGCACAAGCAAGAGATTTATAAAATCTGGAGGAGCATTTAGGCCACAACAGAAGAGAAGACCATTAG
CATCTAAGGAATCGTCGTATGGGCGAAGATAGATGCCACATTCAATCCTTCATCTTGTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.14817.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis