Browse Element(s) Details


Os.14842.1.S1_at

Description gb:AK065164.1
DB_XREF= gi:32975182
TID=Os.14842.1
CNT=16
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.14842 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013002C08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013002C08, full insert sequence.
FL= gb:AK061999.1 gb:AK065164.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2742011/11Formate-tetrahydrofolate ligase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g27360OsAffx.17930.1.S1_at11/119+16630080..16630607hypothetical protein
LOC_Os09g27370Os.7318.1.A1_at11/119+16632329..16635433Spc97/Spc98 family protein, expressed
LOC_Os09g27370Os.7318.2.S1_at11/119+16632329..16635433Spc97/Spc98 family protein, expressed
LOC_Os09g27380OsAffx.30055.1.S1_at11/119+16639056..16639825Zinc finger, C3HC4 type family protein
LOC_Os09g27390OsAffx.30056.1.S1_at11/119+16643542..16646280transposon protein, putative, unclassified
LOC_Os09g27400OsAffx.30057.1.S1_at10/119+16647821..16649401expressed protein
LOC_Os09g27410NANA9+16652112..16652372hypothetical protein
LOC_Os09g27420Os.14842.1.S1_at11/119+16653815..16657634Formate-tetrahydrofolate ligase, putative, expressed
LOC_Os09g27430OsAffx.6415.1.S1_at11/119+16658578..16659351hypothetical protein
LOC_Os09g27440OsAffx.17932.1.S1_at11/119+16659907..16660425hypothetical protein
LOC_Os09g27450OsAffx.17933.1.S1_at11/119+16673597..16675209Homeobox associated leucine zipper family protein, expressed
LOC_Os09g27450Os.49759.1.S1_x_at10/119+16673597..16675209Homeobox associated leucine zipper family protein, expressed
LOC_Os09g27460NANA9+16680045..16680362retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g27470NANA9+16681896..16684189retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0009058biological_processbiosynthesis
GO:0009396biological_processfolic acid and derivative biosynthesis
GO:0004329molecular_functionformate-tetrahydrofolate ligase activity
GO:0005524molecular_functionATP binding
GO:0016874molecular_functionligase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.14842.1.S1_at--889--10111Chr09:16657179..16657203 (25 bp)
TATGCATGGCGAAAACTCAGTACTC
LOC_Os09g27420
Os.14842.1.S1_at--901--9631Chr09:16657195..16657219 (25 bp)
TCAGTACTCGTTTTCGCATGTTCCA
LOC_Os09g27420
Os.14842.1.S1_at--52--10631Chr09:16657244..16657268 (25 bp)
TTCGTGCTTCCTATCAGGGATGTGA
LOC_Os09g27420
Os.14842.1.S1_at--212--31Chr09:16657277..16657301 (25 bp)
ATTGGAGCCGGTTTCATCTACCCAC
LOC_Os09g27420
Os.14842.1.S1_at--486--451Chr09:16657292..16657316 (25 bp)
ATCTACCCACTGGTTGGCACCATGA
LOC_Os09g27420
Os.14842.1.S1_at--323--8511Chr09:16657306..16657330 (25 bp)
TGGCACCATGAGCACAATGCCTGGT
LOC_Os09g27420
Os.14842.1.S1_at--580--3331Chr09:16657375..16657399 (25 bp)
CACTGGCAAAGTCATGGGTCTGTCA
LOC_Os09g27420
Os.14842.1.S1_at--201--10831Chr09:16657454..16657478 (25 bp)
TTGGGACATTCCCTTAGCTGAATAA
LOC_Os09g27420
Os.14842.1.S1_at--267--3091Chr09:16657474..16657498 (25 bp)
AATAATAGCCTCAGTGGCTTCCTGC
LOC_Os09g27420
Os.14842.1.S1_at--1025--2971Chr09:16657552..16657576 (25 bp)
AATGTGGTCGAACCATACTGTTCAG
LOC_Os09g27420
Os.14842.1.S1_at--203--9931Chr09:16657567..16657591 (25 bp)
TACTGTTCAGACTCTGTTCCAATGC
LOC_Os09g27420
Target Sequence 
TATGCATGGCGAAAACTCAGTACTCGTTTTCGCATGTTCCATCCATGAAGGGCGCGCCGTCTGGCTTCGTGCTTCCTATC
AGGGATGTGAGGGCCAGCATTGGAGCCGGTTTCATCTACCCACTGGTTGGCACCATGAGCACAATGCCTGGTNTTCCTAC
AAGGCCCTGCTTNTACGAAATCGACGTCGACACAGCCACTGGCAAAGTCATGGGTCTGTCATAAGCGTTTNTGGAATGGA
TTGCAATTTGGGGCACAATTGTGTAGTTGCAAATTTTGGGACATTCCCTTAGCTGAATAATAGCCTCAGTGGCTTCCTGC
AAGTGCAGCAATACATTTTTCTTTTTGAGTTTCTTGGTGACTGTAAATCAGTAAATGTGGTCGAACCATACTGTTCAGAC
TCTGTTCCAATGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.14842.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis