Browse Element(s) Details


Os.14847.1.S1_at

Description gb:AK062622.1
DB_XREF= gi:32972640
TID=Os.14847.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.14847 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative RNA polymerase (OSJNBb0043P23.23), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-105-B10, full insert sequence.
FL= gb:AK062622.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g6287011/11RNA polymerase Rpb8 family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g62820NANA3+35477948..35479080hypothetical protein
LOC_Os03g62830OsAffx.13589.1.S1_at11/113+35482857..35485781hypothetical protein
LOC_Os03g62840OsAffx.13590.1.S1_at11/113+35486614..35487177hypothetical protein
LOC_Os03g62850Os.20160.1.S1_at11/113+35488114..35496981AMP-binding protein, putative, expressed
LOC_Os03g62860Os.29814.1.S1_at11/113+35497637..35500113Glycosyl hydrolases family 17 protein, expressed
LOC_Os03g62870Os.14847.1.S1_at11/113+35501850..35504003RNA polymerase Rpb8 family protein, expressed
LOC_Os03g62880OsAffx.1594.1.S1_at11/113+35510622..35511544hypothetical protein
LOC_Os03g62900OsAffx.25801.1.S1_at11/113+35522435..35525874hypothetical protein
LOC_Os03g62910Os.23707.1.S1_at11/113+35528696..35535002expressed protein
LOC_Os03g62910Os.23707.2.S1_at4/113+35528696..35535002expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006350biological_processtranscription
GO:0003899molecular_functionDNA-directed RNA polymerase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.14847.1.S1_at--187--6071Chr03:35503095..35503118 (24 bp)
GAGTTTCTCGTATCGAAGCTCGCAG
LOC_Os03g62870
Os.14847.1.S1_at--1125--5391Chr03:35503081..35503105 (25 bp)
GAAGCTCGCAGTGACCAGTTCGATA
LOC_Os03g62870
Os.14847.1.S1_at--311--6291Chr03:35503042..35503066 (25 bp)
GATGTTGCCACAGATGTCTATCCTA
LOC_Os03g62870
Os.14847.1.S1_at--224--7151Chr03:35503027..35503051 (25 bp)
GTCTATCCTATGCATCCAGGTGACA
LOC_Os03g62870
Os.14847.1.S1_at--979--4331Chr03:35502996..35503020 (25 bp)
CCATGGTCTTGGTTCCTACTTTGAA
LOC_Os03g62870
Os.14847.1.S1_at--314--1271Chr03:35502958..35502980 (23 bp)
AGATAGCGCCTTCTTTACACAGGCT
LOC_Os03g62870
Os.14847.1.S1_at--439--751Chr03:35502095..35502119 (25 bp)
ATGTATGCATCATTTGGTGGCCTCC
LOC_Os03g62870
Os.14847.1.S1_at--199--8631Chr03:35502081..35502105 (25 bp)
TGGTGGCCTCCTAGTGATGCTTAAG
LOC_Os03g62870
Os.14847.1.S1_at--311--551Chr03:35502052..35502076 (25 bp)
ATCCCTCCAGTGCTGCGAATTTTGA
LOC_Os03g62870
Os.14847.1.S1_at--689--6211Chr03:35502018..35502042 (25 bp)
GAGGCTGTTCCTACTTATGCGCAAG
LOC_Os03g62870
Os.14847.1.S1_at--705--8631Chr03:35501881..35501905 (25 bp)
TGGGTCTCTCTATGCTTGAACACAC
LOC_Os03g62870
Target Sequence 
GAGTTTCTCGTATCGAAGCTCGCAGTGACCAGTTCGATATGTACATGCAGTTAGATGTTGCCACAGATGTCTATCCTATG
CATCCAGGTGACAGATTTACCATGGTCTTGGTTCCTACTTTGAACTTAGATGGTACCCCAGATAGCGCCTTCTTTACACA
GGCTGGCAGGAAAACTCTGGCTGACAAATATGAGTATGTCATGCATGGGAAGCTTTATAAGATCTCAGAAGACAAAGACA
CCTCTGATCAAAATGCTAAAAAAGTGGAGATGTATGCATCATTTGGTGGCCTCCTAGTGATGCTTAAGGGTGATCCCTCC
AGTGCTGCGAATTTTGAGCTGGACCAGAGGCTGTTCCTACTTATGCGCAAGGTGTAGAATTGTCAAATTTTTAGGAGAAA
ATTTGTCGACAAATGTATAGGTAGTCCCTTACTTAAATAAATGGGTGAACTACATAATATCCTAATGTTGATGGGCCTTT
GTGTGGGTCTCTCTATGCTTGAACACAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.14847.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis