Browse Element(s) Details


Os.14848.1.S1_at

Description gb:AK066069.1
DB_XREF= gi:32976087
TID=Os.14848.1
CNT=15
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.14848 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013058N02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013058N02, full insert sequence.
FL= gb:AK066069.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4804011/11Zinc finger, C3HC4 type family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g48020Os.53541.1.S1_at11/116+29034688..29037184Peroxidase 45 precursor, putative, expressed
LOC_Os06g48030Os.11547.1.S1_s_at11/116+29050014..29054208Peroxidase 16 precursor, putative, expressed
LOC_Os06g48030OsAffx.28164.2.S1_at11/116+29050014..29054208Peroxidase 16 precursor, putative, expressed
LOC_Os06g48030OsAffx.28164.1.S1_at9/116+29050014..29054208Peroxidase 16 precursor, putative, expressed
LOC_Os06g48030Os.26986.1.A1_at1/116+29050014..29054208Peroxidase 16 precursor, putative, expressed
LOC_Os06g48040Os.14848.1.S1_at11/116+29058707..29062782Zinc finger, C3HC4 type family protein, expressed
LOC_Os06g48050Os.9637.1.S1_at11/116+29067774..29070756expressed protein
LOC_Os06g48060Os.51854.1.S1_at11/116+29071377..29075033ABC transporter family protein, expressed
LOC_Os06g48070OsAffx.18275.1.S1_x_at1/116+29085085..29088671retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0005515molecular_functionprotein binding
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.14848.1.S1_at--475--10091Chr06:29059205..29059229 (25 bp)
TAGGTTGTTCAAGCTCGTAAATATT
LOC_Os06g48040
Os.14848.1.S1_at--372--10031Chr06:29059157..29059181 (25 bp)
TAGACATGCTAGACACTGACTCAAT
LOC_Os06g48040
Os.14848.1.S1_at--236--9471Chr06:29059097..29059121 (25 bp)
TCTTGGAAACTCCTGTACATTTTTG
LOC_Os06g48040
Os.14848.1.S1_at--766--10451Chr06:29059071..29059095 (25 bp)
TTCGGTATCCGGTCCAAATTACACA
LOC_Os06g48040
Os.14848.1.S1_at--379--2251Chr06:29059056..29059080 (25 bp)
AAATTACACATCACCTGCCATCAGA
LOC_Os06g48040
Os.14848.1.S1_at--420--691Chr06:29059029..29059053 (25 bp)
ATGAGACCAGAGGACCCTTGGGAAA
LOC_Os06g48040
Os.14848.1.S1_at--767--5531Chr06:29059008..29059032 (25 bp)
GAAAAATTCCTGCTTGATTGGACTT
LOC_Os06g48040
Os.14848.1.S1_at--355--10251Chr06:29058889..29058913 (25 bp)
TTTGGTGTCCAGTGTTTCAGGTGCT
LOC_Os06g48040
Os.14848.1.S1_at--960--7311Chr06:29058869..29058893 (25 bp)
GTGCTTTGTAGCCTGGTTTGAGTTT
LOC_Os06g48040
Os.14848.1.S1_at--761--6791Chr06:29058828..29058852 (25 bp)
GTTATCTGTTGGGTTGGTACTCGGA
LOC_Os06g48040
Os.14848.1.S1_at--562--791Chr06:29058804..29058828 (25 bp)
ATGTGTACTCTTCCTTGGGTATCAA
LOC_Os06g48040
Target Sequence 
TAGGTTGTTCAAGCTCGTAAATATTATAAATTTATAATGAAACAGTGTTAGACATGCTAGACACTGACTCAATTCACTCA
AATTTGTGAATATGATNANATTGCTTTCTTCTTGGAAACTCCTGTACATTTTTGTTTCGGTATCCGGTCCAAATTACACA
TCACCTGCCATCAGATAATGAGACCAGAGGACCCTTGGGAAAAATTCCTGCTTGATTGGACTTATGGTTACAATAATTAA
AATTCTGCTCGATTGGAGTGTTAGTAAAAATTCATTCACTTTGGCCCCNAACCACATATTAGATTTGCAATTACTGATTT
GGTGTCCAGTGTTTCAGGTGCTTTGTAGCCTGGTTTGAGTTTGGAGTGTTCGTAAGGTGTTATCTGTTGGGTTGGTACTC
GGATGTGTACTCTTCCTTGGGTATCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.14848.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis