Browse Element(s) Details


Os.14869.1.S1_at

Description gb:AK102052.1
DB_XREF= gi:32987261
TID=Os.14869.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.14869 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033082B20, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033082B20, full insert sequence.
FL= gb:AK102052.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4912011/11MATE efflux family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g49080OsAffx.11525.1.S1_at7/111+28535960..28537802hypothetical protein
LOC_Os01g49080OsAffx.29394.1.S1_s_at1/111+28535960..28537802hypothetical protein
LOC_Os01g49090NANA1+28545305..28547063hypothetical protein
LOC_Os01g49110Os.53602.1.S1_at11/111+28550877..28561702protein prenyltransferase alpha subunit, putative, expressed
LOC_Os01g49110Os.33918.1.S1_x_at11/111+28550877..28561702protein prenyltransferase alpha subunit, putative, expressed
LOC_Os01g49110Os.41701.1.S1_x_at3/111+28550877..28561702protein prenyltransferase alpha subunit, putative, expressed
LOC_Os01g49120Os.14869.1.S1_at11/111+28561908..28565479MATE efflux family protein, expressed
LOC_Os01g49120Os.41694.1.S1_at8/111+28561908..28565479MATE efflux family protein, expressed
LOC_Os01g49130NANA1+28566917..28567405hypothetical protein
LOC_Os01g49140OsAffx.23722.1.S1_at8/111+28568614..28569233expressed protein
LOC_Os01g49150OsAffx.23723.2.S1_at10/111+28569825..28574144Anti-silencing protein, ASF1-like containing protein, expressed
LOC_Os01g49150OsAffx.23723.1.S1_at10/111+28569825..28574144Anti-silencing protein, ASF1-like containing protein, expressed
LOC_Os01g49160Os.4901.1.S1_at11/111+28576998..28578364Myb-like DNA-binding domain containing protein, expressed
LOC_Os01g49180OsAffx.21494.1.S1_x_at11/111+28588263..28599915DNA ligase I, ATP-dependent family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016020cellular_componentmembrane
GO:0005215molecular_functiontransporter activity
GO:0015297molecular_functionantiporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.14869.1.S1_at--1040--5871Chr01:28562268..28562292 (25 bp)
GAGCCCTCCAGGTATCATCTAGTGG
LOC_Os01g49120
Os.14869.1.S1_at--1056--9571Chr01:28562200..28562224 (25 bp)
TCATCCCTCGGACGGTTGGACTTGC
LOC_Os01g49120
Os.14869.1.S1_at--1117--3771Chr01:28562194..28562218 (25 bp)
CTCGGACGGTTGGACTTGCTCGCGA
LOC_Os01g49120
Os.14869.1.S1_at--1062--5571Chr01:28562108..28562132 (25 bp)
GAAATGAGCCAATCTTTCCTGAATT
LOC_Os01g49120
Os.14869.1.S1_at--814--5191Chr01:28562088..28562112 (25 bp)
GAATTGGTTCATTTTTCACGTGTAG
LOC_Os01g49120
Os.14869.1.S1_at--994--6731Chr01:28562082..28562106 (25 bp)
GTTCATTTTTCACGTGTAGTTTTGC
LOC_Os01g49120
Os.14869.1.S1_at--446--3311Chr01:28562056..28562080 (25 bp)
CACAGGATAGGCAGGGTTGACAGTC
LOC_Os01g49120
Os.14869.1.S1_at--185--7911Chr01:28562028..28562052 (25 bp)
GGTTGCATCCCACGGAAAACGTTTG
LOC_Os01g49120
Os.14869.1.S1_at--1150--7671Chr01:28561990..28562014 (25 bp)
GGGTCCTTTTGTGGATAGTAACAGA
LOC_Os01g49120
Os.14869.1.S1_at--1022--2131Chr01:28561970..28561994 (25 bp)
ACAGAAATCTCAAGCTGTTTGGTTT
LOC_Os01g49120
Os.14869.1.S1_at--296--2691Chr01:28561959..28561983 (25 bp)
AAGCTGTTTGGTTTTCTATTGTACT
LOC_Os01g49120
Target Sequence 
GAGCCCTCCAGGTATCATCTAGTGGANGTAGTTCTACTCCAATTTTTGCTGGGGGCAGTGGGGTAAATNTCATCCCTCGG
ACGGTTGGACTTGCTCGCGAGAGTGNCCATGCAGAGAAGGCATCAATAANCCNCCCTTTTTTGTGTGTTTCATCNCAGCA
CGAAATGAGCCAATCTTTCCTGAATTGGTTCATTTTTCACGTGTAGTTTTGCNCACAGGATAGGCAGGGTTGACAGTCNA
GGGTTGCATCCCACGGAAAACGTTTGGNTAGNAAANAAGGGGTCCTTTTGTGGATAGTAACAGAAATCTCAAGCTGTTTG
GTTTTCTATTGTACT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.14869.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis