Browse Element(s) Details


Os.14877.1.S1_at

Description gb:AK099437.1
DB_XREF= gi:32984646
TID=Os.14877.1
CNT=36
FEA=FLmRNA
TIER=FL+Stack
STK=8
UG=Os.14877 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013020D08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013020D08, full insert sequence.
FL= gb:AK099437.1 gb:AK071995.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1018010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g10140Os.6107.1.A1_at11/113+5113432..5116623Zinc finger, C2H2 type family protein, expressed
LOC_Os03g10150Os.57173.1.S1_at11/113+5130083..5131155uncharacterized plant-specific domain TIGR01568 family protein, expressed
LOC_Os03g10160OsAffx.3182.1.S1_at11/113+5134654..5134890hypothetical protein
LOC_Os03g10170NANA3+5136621..5137763hypothetical protein
LOC_Os03g10180Os.14877.1.S1_at10/113+5140681..5145886expressed protein
LOC_Os03g10190Os.5952.1.S1_at11/113+5146424..5149812Seryl-tRNA synthetase, putative, expressed
LOC_Os03g10190Os.5952.4.S1_x_at7/113+5146424..5149812Seryl-tRNA synthetase, putative, expressed
LOC_Os03g10200OsAffx.3183.1.S1_at11/113+5154255..5158348UPF0326 protein hag1, putative, expressed
LOC_Os03g10200Os.6426.1.S1_at10/113+5154255..5158348UPF0326 protein hag1, putative, expressed
LOC_Os03g10210Os.9086.1.S1_at11/113+5159829..5161302Homeobox domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009904biological_processchloroplast accumulation movement
GO:0005737cellular_componentcytoplasm
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.14877.1.S1_at--616--2011NONE
ACTACAATATGTTCTATGGCCTGAG
NONE
Os.14877.1.S1_at--427--8071Chr03:5144837..5144861 (25 bp)
GGAGCAGCTGTTAAGAAGGCCTATC
LOC_Os03g10180
Os.14877.1.S1_at--53--4951Chr03:5144867..5144891 (25 bp)
GCATTGTTATGCCTTCATCCAGATA
LOC_Os03g10180
Os.14877.1.S1_at--718--2591Chr03:5144901..5144925 (25 bp)
AACGAGGAGCTGCTATGCATCAGAA
LOC_Os03g10180
Os.14877.1.S1_at--482--7871Chr03:5144941..5145366 (25 bp)
GGTTTTTGACATTCTACAGGAGGCA
LOC_Os03g10180
Os.14877.1.S1_at--601--6871Chr03:5145399..5145423 (25 bp)
GTATTCCTTAGATCCTATCGTTGTT
LOC_Os03g10180
Os.14877.1.S1_at--109--9391Chr03:5145416..5145440 (25 bp)
TCGTTGTTTTGGCTCTATCATTCAG
LOC_Os03g10180
Os.14877.1.S1_at--467--1931Chr03:5145472..5145496 (25 bp)
ACGGATGGTAATGCCCAGGATCACA
LOC_Os03g10180
Os.14877.1.S1_at--728--5011Chr03:5145552..5145576 (25 bp)
GCAGTCCTCTTGCAGTCTGGTGAAT
LOC_Os03g10180
Os.14877.1.S1_at--759--3331Chr03:5145579..5145603 (25 bp)
CACTGTATGAATTTGCTTGCCTAAA
LOC_Os03g10180
Os.14877.1.S1_at--269--4651Chr03:5145624..5145648 (25 bp)
GCAGTTCTTGTACAAATTTTCCGGT
LOC_Os03g10180
Target Sequence 
ACTACAATATGTTCTATGGCCTGAGAGTGGATGGAAACCAGTCCCCCTTGTTGATATAATTGAAGGAGCAGCTGTTAAGA
AGGCCTATCAGAAGGCATTGTTATGCCTTCATCCAGATAAGTTGCAACAACGAGGAGCTGCTATGCATCAGAAGTATATA
GCAGAAAAGGTTTTTGACATTCTACAGGAGGCATGGAAAGAATTCAATACAGTTACTTTTGGATAGTATTCCTTAGATCC
TATCGTTGTTTTGGCTCTATCATTCAGATATGGTGCTTGTTGTTGTCCACTTTANTGTACGGATGGTAATGCCCAGGATC
ACANTTGGATATGGACATGGCCATGGGAGGCCATGATATGCATTTTTTTTTGAGGTATTGCAGTCCTCTTGCAGTCTGGT
GAATTGCACTGTATGAATTTGCTTGCCTAAATGTAAGTACTTAGAAAAATAGCAGTTCTTGTACAAATTTTCCGGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.14877.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis