Browse Element(s) Details


OsAffx.3183.1.S1_at

Description tigr:9631.m00927
TID=OsAffx.3183.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1020011/11UPF0326 protein hag1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g10150Os.57173.1.S1_at11/113+5130083..5131155uncharacterized plant-specific domain TIGR01568 family protein, expressed
LOC_Os03g10160OsAffx.3182.1.S1_at11/113+5134654..5134890hypothetical protein
LOC_Os03g10170NANA3+5136621..5137763hypothetical protein
LOC_Os03g10180Os.14877.1.S1_at10/113+5140681..5145886expressed protein
LOC_Os03g10190Os.5952.1.S1_at11/113+5146424..5149812Seryl-tRNA synthetase, putative, expressed
LOC_Os03g10190Os.5952.4.S1_x_at7/113+5146424..5149812Seryl-tRNA synthetase, putative, expressed
LOC_Os03g10200OsAffx.3183.1.S1_at11/113+5154255..5158348UPF0326 protein hag1, putative, expressed
LOC_Os03g10200Os.6426.1.S1_at10/113+5154255..5158348UPF0326 protein hag1, putative, expressed
LOC_Os03g10210Os.9086.1.S1_at11/113+5159829..5161302Homeobox domain containing protein, expressed
LOC_Os03g10220OsAffx.12806.1.S1_x_at11/113+5179333..5182639Methyladenine glycosylase family protein, expressed
LOC_Os03g10220Os.25146.1.A1_at11/113+5179333..5182639Methyladenine glycosylase family protein, expressed
LOC_Os03g10220Os.49353.2.S1_at11/113+5179333..5182639Methyladenine glycosylase family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.3183.1.S1_at--832--4411Chr03:5157169..5157193 (25 bp)
GCCAGAATAGGTACCATACCTTTAT
LOC_Os03g10200
OsAffx.3183.1.S1_at--877--6971Chr03:5157179..5157203 (25 bp)
GTACCATACCTTTATTCAACCACTA
LOC_Os03g10200
OsAffx.3183.1.S1_at--434--9971Chr03:5157185..5157209 (25 bp)
TACCTTTATTCAACCACTAATGCTT
LOC_Os03g10200
OsAffx.3183.1.S1_at--518--631Chr03:5157204..5157228 (25 bp)
ATGCTTATATTAGCTGTTCAAGGTC
LOC_Os03g10200
OsAffx.3183.1.S1_at--465--10491Chr03:5157220..5157244 (25 bp)
TTCAAGGTCTCCTACAAAGTCAAGG
LOC_Os03g10200
OsAffx.3183.1.S1_at--822--10311Chr03:5157248..5157272 (25 bp)
TTATGAAACCAATGACTGCATCTGA
LOC_Os03g10200
OsAffx.3183.1.S1_at--150--691Chr03:5157259..5157283 (25 bp)
ATGACTGCATCTGAATGTGCTTAGT
LOC_Os03g10200
OsAffx.3183.1.S1_at--1142--8991Chr03:5157270..5157294 (25 bp)
TGAATGTGCTTAGTCAGAATGCATT
LOC_Os03g10200
OsAffx.3183.1.S1_at--668--1451Chr03:5157285..5157309 (25 bp)
AGAATGCATTGAGCAGTCTGACAGT
LOC_Os03g10200
OsAffx.3183.1.S1_at--590--8911Chr03:5157294..5157318 (25 bp)
TGAGCAGTCTGACAGTTACCGCCAT
LOC_Os03g10200
OsAffx.3183.1.S1_at--770--3451Chr03:5157298..5157322 (25 bp)
CAGTCTGACAGTTACCGCCATCATA
LOC_Os03g10200
Target Sequence 
GCCAGAATAGGTACCATACCTTTATTCAACCACTAATGCTTATATTAGCTGTTCAAGGTCTCCTACAAAGTCAAGGAAAT
TATGAAACCAATGACTGCATCTGAATGTGCTTAGTCAGAATGCATTGAGCAGTCTGACAGTTACCGCCATCATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.3183.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis