Browse Element(s) Details


OsAffx.3182.1.S1_at

Description tigr:9631.m00921
TID=OsAffx.3182.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1016011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g10140Os.6107.1.A1_at11/113+5113432..5116623Zinc finger, C2H2 type family protein, expressed
LOC_Os03g10150Os.57173.1.S1_at11/113+5130083..5131155uncharacterized plant-specific domain TIGR01568 family protein, expressed
LOC_Os03g10160OsAffx.3182.1.S1_at11/113+5134654..5134890hypothetical protein
LOC_Os03g10170NANA3+5136621..5137763hypothetical protein
LOC_Os03g10180Os.14877.1.S1_at10/113+5140681..5145886expressed protein
LOC_Os03g10190Os.5952.1.S1_at11/113+5146424..5149812Seryl-tRNA synthetase, putative, expressed
LOC_Os03g10190Os.5952.4.S1_x_at7/113+5146424..5149812Seryl-tRNA synthetase, putative, expressed
LOC_Os03g10200OsAffx.3183.1.S1_at11/113+5154255..5158348UPF0326 protein hag1, putative, expressed
LOC_Os03g10200Os.6426.1.S1_at10/113+5154255..5158348UPF0326 protein hag1, putative, expressed
LOC_Os03g10210Os.9086.1.S1_at11/113+5159829..5161302Homeobox domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.3182.1.S1_at--949--9231Chr03:5134685..5134709 (25 bp)
TCCATGCGTTCGAGCACCACAGCAG
LOC_Os03g10160
OsAffx.3182.1.S1_at--386--611Chr03:5134688..5134712 (25 bp)
ATGCGTTCGAGCACCACAGCAGGGC
LOC_Os03g10160
OsAffx.3182.1.S1_at--45--2151Chr03:5134703..5134727 (25 bp)
ACAGCAGGGCGGTGGACTCCACCGT
LOC_Os03g10160
OsAffx.3182.1.S1_at--234--7731Chr03:5134713..5134737 (25 bp)
GGTGGACTCCACCGTGGCATGCTCC
LOC_Os03g10160
OsAffx.3182.1.S1_at--897--6351Chr03:5134742..5134766 (25 bp)
GATCCAGGCGGACCGGGTCGTCGTC
LOC_Os03g10160
OsAffx.3182.1.S1_at--566--1811Chr03:5134776..5134800 (25 bp)
ACCCACGGCGTTCTGCGACCACTTG
LOC_Os03g10160
OsAffx.3182.1.S1_at--952--7211Chr03:5134813..5134837 (25 bp)
GTCGACGCGGTTGTGCTCCTCAGTG
LOC_Os03g10160
OsAffx.3182.1.S1_at--877--1831Chr03:5134817..5134841 (25 bp)
ACGCGGTTGTGCTCCTCAGTGTGTT
LOC_Os03g10160
OsAffx.3182.1.S1_at--585--6631Chr03:5134822..5134846 (25 bp)
GTTGTGCTCCTCAGTGTGTTCGCTG
LOC_Os03g10160
OsAffx.3182.1.S1_at--909--9631Chr03:5134832..5134856 (25 bp)
TCAGTGTGTTCGCTGCCCTGGGTTT
LOC_Os03g10160
OsAffx.3182.1.S1_at--408--1091Chr03:5134834..5134858 (25 bp)
AGTGTGTTCGCTGCCCTGGGTTTCC
LOC_Os03g10160
Target Sequence 
TCCATGCGTTCGAGCACCACAGCAGGGCGGTGGACTCCACCGTGGCATGCTCCTCCCGATCCAGGCGGACCGGGTCGTCG
TCGTGCGGGTCACCCACGGCGTTCTGCGACCACTTGCCGATGGCCGTGGTCGACGCGGTTGTGCTCCTCAGTGTGTTCGC
TGCCCTGGGTTTCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.3182.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis