Browse Element(s) Details


Os.6426.1.S1_at

Description gb:AK104430.1
DB_XREF= gi:32989639
TID=Os.6426.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.6426 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:006-206-H02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:006-206-H02, full insert sequence.
FL= gb:AK060325.1 gb:AK104430.1 gb:AK071509.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1020010/11UPF0326 protein hag1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g10150Os.57173.1.S1_at11/113+5130083..5131155uncharacterized plant-specific domain TIGR01568 family protein, expressed
LOC_Os03g10160OsAffx.3182.1.S1_at11/113+5134654..5134890hypothetical protein
LOC_Os03g10170NANA3+5136621..5137763hypothetical protein
LOC_Os03g10180Os.14877.1.S1_at10/113+5140681..5145886expressed protein
LOC_Os03g10190Os.5952.1.S1_at11/113+5146424..5149812Seryl-tRNA synthetase, putative, expressed
LOC_Os03g10190Os.5952.4.S1_x_at7/113+5146424..5149812Seryl-tRNA synthetase, putative, expressed
LOC_Os03g10200OsAffx.3183.1.S1_at11/113+5154255..5158348UPF0326 protein hag1, putative, expressed
LOC_Os03g10200Os.6426.1.S1_at10/113+5154255..5158348UPF0326 protein hag1, putative, expressed
LOC_Os03g10210Os.9086.1.S1_at11/113+5159829..5161302Homeobox domain containing protein, expressed
LOC_Os03g10220OsAffx.12806.1.S1_x_at11/113+5179333..5182639Methyladenine glycosylase family protein, expressed
LOC_Os03g10220Os.25146.1.A1_at11/113+5179333..5182639Methyladenine glycosylase family protein, expressed
LOC_Os03g10220Os.49353.2.S1_at11/113+5179333..5182639Methyladenine glycosylase family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6426.1.S1_at--807--9311NONE
TCGCCAGAATAGGTGCCATTTGCAA
NONE
Os.6426.1.S1_at--740--2811Chr03:5157815..5157839 (25 bp)
AAGATATCCCCAGTCGGCCATGATC
LOC_Os03g10200
Os.6426.1.S1_at--418--4431Chr03:5157831..5157855 (25 bp)
GCCATGATCCAAACAGTCGACCTGA
LOC_Os03g10200
Os.6426.1.S1_at--1056--8871Chr03:5157876..5157900 (25 bp)
TGAGGAACCCGTTGAGCTGCTTCTC
LOC_Os03g10200
Os.6426.1.S1_at--843--2331Chr03:5157959..5157983 (25 bp)
AAAGAGCCTCTTGCGTACAGTTCAT
LOC_Os03g10200
Os.6426.1.S1_at--100--8411Chr03:5158025..5158049 (25 bp)
GGCCTCCCTTGTGTAACTTTTGATA
LOC_Os03g10200
Os.6426.1.S1_at--513--8511Chr03:5158073..5158097 (25 bp)
TGGCAACATCTGGAGGGCACTACCC
LOC_Os03g10200
Os.6426.1.S1_at--1144--9151Chr03:5158105..5158129 (25 bp)
TGCCGCAACTGTCAGCTAATTCTTT
LOC_Os03g10200
Os.6426.1.S1_at--594--3151Chr03:5158122..5158146 (25 bp)
AATTCTTTTTGCTCGGTATCAGTCA
LOC_Os03g10200
Os.6426.1.S1_at--712--6111Chr03:5158228..5158252 (25 bp)
GAGTGAATGCCTCTCAATTCTACCC
LOC_Os03g10200
Os.6426.1.S1_at--640--3031Chr03:5158305..5158329 (25 bp)
AATCCACTATTCTTTCAGCTGTTGT
LOC_Os03g10200
Target Sequence 
TCGCCAGAATAGGTGCCATTTGCAACTGCCTTCTGCCAGAATCACTCAAGATATCCCCAGTCGGCCATGATCCAAACAGT
CGACCTGAAGATTGNGAGAAAAGGCGGCTGAGGAACCCGTTGAGCTGCTTCTCTTCGATCTCGAGCCAGAGGCAGCTGCC
CCCATCTTCCCCGTTCCCGACATCACCTGTGAAAGAGCCTCTTGCGTACAGTTCATCAAGGAAATCCAGCGCTCCATCAC
TGAGGAATAGGTAGCCTGGCCTCCCTTGTGTAACTTTTGATACCAAGTTAGGCTAATTTGGTCAGTGGCAACATCTGGAG
GGCACTACCCTGCATGCTGCCGCAACTGTCAGCTAATTCTTTTTGCTCGGTATCAGTCAAAATGCTTGGTGGTGTTGTTG
TATCATGTAAGTGGAACTAATGCGAGTGAGTCACCTGGAGAGGTGTCTCTGTGTGGGTGAGAGTGAATGCCTCTCAATTC
TACCCACCCCCTGTACTGATCATGAGACACGAACCGGGATGTATTTTGTATATTATTAATCCACTATTCTTTCAGCTGTT
GT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6426.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis