Browse Element(s) Details


OsAffx.12806.1.S1_x_at

Description tigr:9631.m00931
TID=OsAffx.12806.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=14940-15720
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1022011/11Methyladenine glycosylase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g10200OsAffx.3183.1.S1_at11/113+5154255..5158348UPF0326 protein hag1, putative, expressed
LOC_Os03g10200Os.6426.1.S1_at10/113+5154255..5158348UPF0326 protein hag1, putative, expressed
LOC_Os03g10210Os.9086.1.S1_at11/113+5159829..5161302Homeobox domain containing protein, expressed
LOC_Os03g10220OsAffx.12806.1.S1_x_at11/113+5179333..5182639Methyladenine glycosylase family protein, expressed
LOC_Os03g10220Os.25146.1.A1_at11/113+5179333..5182639Methyladenine glycosylase family protein, expressed
LOC_Os03g10220Os.49353.2.S1_at11/113+5179333..5182639Methyladenine glycosylase family protein, expressed
LOC_Os03g10230Os.49353.1.S1_at11/113+5185380..5190478expressed protein
LOC_Os03g10240Os.18318.1.S1_at10/113+5193230..5196769expressed protein
LOC_Os03g10250Os.21800.2.S1_at10/113+5197724..5198821expressed protein
LOC_Os03g10260OsAffx.25035.1.S1_at10/113+5204554..5205453hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006281biological_processDNA repair
GO:0008725molecular_functionDNA-3-methyladenine glycosylase I activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12806.1.S1_x_at--517--7651Chr03:5180616..5180640 (25 bp)
GGGAGTTCCAGTTCATGATGACCAG
LOC_Os03g10220
OsAffx.12806.1.S1_x_at--1052--6851Chr03:5180586..5180610 (25 bp)
GTTTGAGCTGCTTACCTTATCACAA
LOC_Os03g10220
OsAffx.12806.1.S1_x_at--1094--2251Chr03:5180551..5180575 (25 bp)
AAATCACCTGGCCTATCATTCTGAA
LOC_Os03g10220
OsAffx.12806.1.S1_x_at--667--7931Chr03:5179950..5179974 (25 bp)
GGATTTCGGATCGTTCAGCAACTAC
LOC_Os03g10220
OsAffx.12806.1.S1_x_at--175--5151Chr03:5179933..5179957 (25 bp)
GCAACTACTGTTGGAGCTTCGTAAA
LOC_Os03g10220
OsAffx.12806.1.S1_x_at--564--10131Chr03:5179880..5179904 (25 bp)
TATGCTCGCCAAGTACCTATCAAGA
LOC_Os03g10220
OsAffx.12806.1.S1_x_at--619--611Chr03:5179823..5179847 (25 bp)
ATGCGACGAGGCTTCCAATGCGTTG
LOC_Os03g10220
OsAffx.12806.1.S1_x_at--987--3011Chr03:5179807..5179831 (25 bp)
AATGCGTTGGCCCTACGACAATCTA
LOC_Os03g10220
OsAffx.12806.1.S1_x_at--692--5011Chr03:5179773..5179797 (25 bp)
GCAGGTTTCTGGCATCGTTAACGAC
LOC_Os03g10220
OsAffx.12806.1.S1_x_at--1085--6751Chr03:5179757..5179781 (25 bp)
GTTAACGACCATCTGTCATGCTGCT
LOC_Os03g10220
OsAffx.12806.1.S1_x_at--404--7131Chr03:5179743..5179767 (25 bp)
GTCATGCTGCTTCAGGTTTCAGGAT
LOC_Os03g10220
Target Sequence 
GGGAGTTCCAGTTCATGATGACCAGAAGCTGTTTGAGCTGCTTACCTTATCACAAGCCTTAGCTGAAATCACCTGGCCTA
TCATTCTGAACAAGAGGGACGAATTCAGGGAGATGTTTGATGGTTTCAACTATGCATCAGTGTCTGAGTTCACGGACAAG
AAGATAAACCTTTTGTCGAAATCAAATGGAAACATGCTACTTTCGGAGCAAAAGATACGGGCTGTTGTAACAAATGCCAA
GCAAATGCATAAGGTAATCCAGGATTTCGGATCGTTCAGCAACTACTGTTGGAGCTTCGTAAAACACAAACCCGTCAAAA
GCAACTTCCGCTATGCTCGCCAAGTACCTATCAAGACGCCCAAATCTGAGGCCATAAGCAAGGGCCTGATGCGACGAGGC
TTCCAATGCGTTGGCCCTACGACAATCTACTCCTTCATGCAGGTTTCTGGCATCGTTAACGACCATCTGTCATGCTGCTT
CAGGTTTCAGGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12806.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis