Browse Element(s) Details


Os.21800.2.S1_at

Description gb:AK111388.1
DB_XREF= gi:32996597
TID=Os.21800.2
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.21800 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-182-C02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-182-C02, full insert sequence.
FL= gb:AK111388.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1025010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g10220OsAffx.12806.1.S1_x_at11/113+5179333..5182639Methyladenine glycosylase family protein, expressed
LOC_Os03g10220Os.25146.1.A1_at11/113+5179333..5182639Methyladenine glycosylase family protein, expressed
LOC_Os03g10220Os.49353.2.S1_at11/113+5179333..5182639Methyladenine glycosylase family protein, expressed
LOC_Os03g10230Os.49353.1.S1_at11/113+5185380..5190478expressed protein
LOC_Os03g10240Os.18318.1.S1_at10/113+5193230..5196769expressed protein
LOC_Os03g10250Os.21800.2.S1_at10/113+5197724..5198821expressed protein
LOC_Os03g10260OsAffx.25035.1.S1_at10/113+5204554..5205453hypothetical protein
LOC_Os03g10270Os.2741.4.S1_x_at2/113+5211963..5212769hypothetical protein
LOC_Os03g10280OsAffx.26548.1.S1_at6/113+5221538..5224861retrotransposon protein, putative, unclassified
LOC_Os03g10280OsAffx.25036.1.S1_at5/113+5221538..5224861retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.21800.2.S1_at--903--1611Chr03:5198258..5198282 (25 bp)
AGCGGCTGCGGTGGATTTCTTCGGG
LOC_Os03g10250
Os.21800.2.S1_at--638--4011Chr03:5198294..5198318 (25 bp)
CGATTTTTTTTCTCGTCGTCATCAC
LOC_Os03g10250
Os.21800.2.S1_at--129--9311Chr03:5198330..5198354 (25 bp)
TCCCGCTGGTTGTCGGCAACACCTG
LOC_Os03g10250
Os.21800.2.S1_at--477--8352Chr11:26888171..26888195 (25 bp)
GGCTGGAGTCCAGCCATCGCCGAGT
NONE
Os.21800.2.S1_at--230--9331Chr03:5198394..5198418 (25 bp)
TCGCCGAGTTCCCATTGATCACAGG
LOC_Os03g10250
Os.21800.2.S1_at--89--6071Chr03:5198399..5198423 (25 bp)
GAGTTCCCATTGATCACAGGACCAC
LOC_Os03g10250
Os.21800.2.S1_at--229--1831Chr03:5198670..5198694 (25 bp)
ACGCCGGCTAGGCTGCCAATGAAAA
LOC_Os03g10250
Os.21800.2.S1_at--742--8051Chr03:5198734..5198758 (25 bp)
GGAGAGGCCAACGTGTGGAAACTAT
LOC_Os03g10250
Os.21800.2.S1_at--223--8531Chr03:5198749..5198773 (25 bp)
TGGAAACTATGTGGGTCCAACGCTG
LOC_Os03g10250
Os.21800.2.S1_at--99--2611Chr03:5198767..5198791 (25 bp)
AACGCTGAGTCCGTTGTTATATCGG
LOC_Os03g10250
Os.21800.2.S1_at--366--2651Chr03:5198803..5198827 (25 bp)
AACCAACGAGGACCTGTTTACATTG
NONE
Target Sequence 
AGCGGCTGCGGTGGATTTCTTCGGGGGGCGGCCACCCGATTTTTTTTCTCGTCGTCATCACCCGATTGCGCCTCCCGCTG
GTTGTCGGCAACACCTGGGGCGAGGCCACCCCGACATCGCGGCTGGAGTCCAGCCATCGCCGAGTTCCCATTGATCACAG
GACCACCTCCACCCACCGCGGCGTCACCTTGGGCAGCCTCCGCCGCGCCGCTCCTCTCCTCGTTGGCGTCGACCCGCCTC
CGCCGGTCGTCTCCGCCACCAGCGCCGGGGATCGACGAGGAGCCATGGCGGTGGGATCTGGCGCCCGCGCCGTCGGCGAC
GGCGGTGGCGGCGGTGTGGGGGGGGGGCTCCCGCTCGTCGCCCGTCACCGCGTCGTCACTGCCGCTGCCTCCCCCACCGG
CCTCCTCTCCACACGCCGGCTAGGCTGCCAATGAAAAGAAGAGGAAAGAGGAAGAGAGGTGGAGAAGGGAGGGGAAGGAG
AGGCCAACGTGTGGAAACTATGTGGGTCCAACGCTGAGTCCGTTGTTATATCGGATAAAATCAAAAACCAACGAGGACCT
GTTTACATTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.21800.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis