Browse Element(s) Details


Os.49353.1.S1_at

Description gb:AK072933.1
DB_XREF= gi:32982956
TID=Os.49353.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49353 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-146-D11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023145E02, full insert sequence.
FL= gb:AK072933.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1023011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g10210Os.9086.1.S1_at11/113+5159829..5161302Homeobox domain containing protein, expressed
LOC_Os03g10220OsAffx.12806.1.S1_x_at11/113+5179333..5182639Methyladenine glycosylase family protein, expressed
LOC_Os03g10220Os.25146.1.A1_at11/113+5179333..5182639Methyladenine glycosylase family protein, expressed
LOC_Os03g10220Os.49353.2.S1_at11/113+5179333..5182639Methyladenine glycosylase family protein, expressed
LOC_Os03g10230Os.49353.1.S1_at11/113+5185380..5190478expressed protein
LOC_Os03g10240Os.18318.1.S1_at10/113+5193230..5196769expressed protein
LOC_Os03g10250Os.21800.2.S1_at10/113+5197724..5198821expressed protein
LOC_Os03g10260OsAffx.25035.1.S1_at10/113+5204554..5205453hypothetical protein
LOC_Os03g10270Os.2741.4.S1_x_at2/113+5211963..5212769hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49353.1.S1_at--154--10351Chr03:5189907..5189927 (21 bp)
TTTAGCAGTTCCTCTTTCCATCTAT
LOC_Os03g10230
Os.49353.1.S1_at--437--451Chr03:5189922..5189946 (25 bp)
ATCTATGTGTTGTCACTACCTCTGC
LOC_Os03g10230
Os.49353.1.S1_at--41--9491Chr03:5189942..5189966 (25 bp)
TCTGCCATACATTCCTGGTGGGACA
LOC_Os03g10230
Os.49353.1.S1_at--527--7311Chr03:5189992..5190016 (25 bp)
GTGCTGCTATCTTAGTTCTTGGGTT
LOC_Os03g10230
Os.49353.1.S1_at--751--7671Chr03:5190012..5190036 (25 bp)
GGGTTACTCCTATACAATCTTCCTA
LOC_Os03g10230
Os.49353.1.S1_at--422--5631Chr03:5190094..5190118 (25 bp)
GACAGGAAACTTTTGATGCCCCATG
LOC_Os03g10230
Os.49353.1.S1_at--823--1231Chr03:5190211..5190235 (25 bp)
AGTTCCTCAGCCTGTGTGACTTCAA
LOC_Os03g10230
Os.49353.1.S1_at--167--2311Chr03:5190240..5190264 (25 bp)
AAAGCGCCTAGTTTCGAGTACTTAG
LOC_Os03g10230
Os.49353.1.S1_at--546--2131Chr03:5190297..5190321 (25 bp)
ACAGCTACTTTCAGCCTTTCATAGG
LOC_Os03g10230
Os.49353.1.S1_at--33--291Chr03:5190317..5190341 (25 bp)
ATAGGTTTTACTCACATGCTTCCAG
LOC_Os03g10230
Os.49353.1.S1_at--226--1571Chr03:5190437..5190461 (25 bp)
AGCTATCTCCCTGTTTATATTTTGA
LOC_Os03g10230
Target Sequence 
TTTAGCAGTTCCTCTTTCCATCTATGTGTTGTCACTACCTCTGCCATACATTCCTGGTGGGACAAATTTAAGCACTTCAT
TTTTGGTTGGTGCTGCTATCTTAGTTCTTGGGTTACTCCTATACAATCTTCCTAAAAANTTAGCCGGCCGAATGAAGACC
GACTAATCTATACCAAGTCAAATACAAGGATGACAGGAAACTTTTGATGCCCCATGTTGATACAAAGATTATAATTCCGT
TTCGTTGCCAACCAGCAGCAAAAATTTGTNCAGAACTTCTGAAGAGCGCCTCGCCGCCGTGCTACTGCAGTTCCTCAGCC
TGTGTGACTTCAACCAGAAAGCGCCTAGTTTCGAGTACTTAGGAACTCCTTTTTTTTGTTTTTTGTTTTGTGCCACAGCT
ACTTTCAGCCTTTCATAGGTTTTACTCACATGCTTCCAGGTAAGTCACGAATTTTAATTTGCTCAGTTAGGATAGGATTT
AGCTCAAATGTAATGGTTTTTATATGGGTATTCGGTATTCCCTANANNNNNNTTAGCTATCTCCCTGTTTATATTTTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49353.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis