Browse Element(s) Details


Os.14914.1.S1_at

Description gb:AK065303.1
DB_XREF= gi:32975321
TID=Os.14914.1
CNT=20
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.14914 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013002N24, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013002N24, full insert sequence.
FL= gb:AK065303.1 gb:AK061618.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0443011/11protein phosphatase 2C homolog, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g04410Os.7192.1.S1_at11/113+2005928..2012682Aconitate hydratase, cytoplasmic, putative, expressed
LOC_Os03g04420OsAffx.12731.1.S1_at11/113+2020097..2021140hypothetical protein
LOC_Os03g04430Os.14914.1.S1_at11/113+2034567..2038086protein phosphatase 2C homolog, putative, expressed
LOC_Os03g04440Os.6973.1.S1_at11/113+2038421..2042351expressed protein
LOC_Os03g04450Os.49230.1.S1_at11/113+2044160..2046848expressed protein
LOC_Os03g04460Os.5553.1.S1_at11/113+2048569..2052341Eukaryotic porin family protein, expressed
LOC_Os03g04460Os.55320.1.S1_at11/113+2048569..2052341Eukaryotic porin family protein, expressed
LOC_Os03g04470OsAffx.3129.1.S1_x_at11/113+2052531..2054102expressed protein
LOC_Os03g04470Os.10426.1.S1_at10/113+2052531..2054102expressed protein
LOC_Os03g04480Os.52832.1.S1_at11/113+2054433..2056747CorA-like Mg2+ transporter protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0015071molecular_functionprotein phosphatase type 2C activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.14914.1.S1_at--463--51Chr03:2037545..2037569 (25 bp)
ATTGATCGTGGCGTGAGGCGTCATT
LOC_Os03g04430
Os.14914.1.S1_at--260--3611Chr03:2037589..2037613 (25 bp)
CATTGTGGTGTTTCTTGATTCGAAT
LOC_Os03g04430
Os.14914.1.S1_at--404--5091Chr03:2037726..2037750 (25 bp)
GCACCTATTGAAGGAGCTATACTGC
LOC_Os03g04430
Os.14914.1.S1_at--1154--8711Chr03:2037845..2037869 (25 bp)
TGTTTAGACCCCACCTGGTAATTAG
LOC_Os03g04430
Os.14914.1.S1_at--153--6551Chr03:2037891..2037915 (25 bp)
GATTAGATTATTCCTTAGCAACGCA
LOC_Os03g04430
Os.14914.1.S1_at--50--4311Chr03:2037944..2037968 (25 bp)
CCTTCTTTATTCTTATCCTTTCTCT
LOC_Os03g04430
Os.14914.1.S1_at--1089--10131Chr03:2037957..2037981 (25 bp)
TATCCTTTCTCTTACCCACGAGAGA
LOC_Os03g04430
Os.14914.1.S1_at--639--3451Chr03:2037983..2038007 (25 bp)
CAGGTGGTTGTAAATTGCCCAGAAC
LOC_Os03g04430
Os.14914.1.S1_at--1052--10691Chr03:2037997..2038021 (25 bp)
TTGCCCAGAACACCTTTTTCGTAAT
LOC_Os03g04430
Os.14914.1.S1_at--349--7071Chr03:2038017..2038041 (25 bp)
GTAATAGTCCATCATATCCCCTTTT
LOC_Os03g04430
Os.14914.1.S1_at--130--551Chr03:2038032..2038056 (25 bp)
ATCCCCTTTTTTCGTGTTGATAATG
LOC_Os03g04430
Target Sequence 
ATTGATCGTGGCGTGAGGCGTCATTTCCACGACGATATAACCGTCATTGTGGTGTTTCTTGATTCGAATGCCATAAGCAA
AGCAAACTGGAGCCGAGGTCCTTCTGTTTCCCTGAGAGGGGGTGGTGTCACCCTCCCTGCAAATTCCCTTGCGCCTTTCT
CNNCTCCCACGGTGTTAAGCAGCACCTATTGAAGGAGCTATACTGCAAAGAACATGAACATCTACAGTAACACAGATGGA
GGTGAAAGCAGCTGCCGTTATCAANTGTACTGTACTCCTTCTGTGTTGCTCTTATGAAACTGTTTAGACCCCACCTGGTA
ATTAGTGTACTGATAGCGAGGTATAAGATTAGATTATTCCTTAGCAACGCAATCTTTTTTTTCTTTTCTTTTTCTTTTTC
CTTCTTTATTCTTATCCTTTCTCTTACCCACGAGAGAACAGGTGGTTGTAAATTGCCCAGAACACCTTTTTCGTAATAGT
CCATCATATCCCCTTTTTTCGTGTTGATAATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.14914.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis