Browse Element(s) Details


Os.14952.1.A1_at

Description gb:AK106146.1
DB_XREF= gi:32991355
TID=Os.14952.1
CNT=16
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.14952 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-207-H03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-207-H03, full insert sequence.
FL= gb:AK106146.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g537009/11PHD-finger family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g53660Os.46743.3.S1_a_at11/113+30714994..30724355myosin family protein, putative, expressed
LOC_Os03g53670Os.9822.2.S1_a_at11/113+30728128..30732240YT521-B-like family protein, expressed
LOC_Os03g53680NANA3+30738028..30738258hypothetical protein
LOC_Os03g53690Os.55539.1.S1_at11/113+30738832..30739853NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os03g53700Os.14952.1.A1_at9/113+30742024..30747217PHD-finger family protein, expressed
LOC_Os03g53710Os.52647.1.S1_at11/113+30746891..30748683Aldose 1-epimerase family protein, expressed
LOC_Os03g53720Os.26432.1.S1_at11/113+30753769..30757824protein kinase family protein, putative, expressed
LOC_Os03g53730Os.56988.1.S1_at11/113+30758057..30759117flavodoxin family protein, expressed
LOC_Os03g53740Os.49691.1.S1_at11/113+30759437..30760399expressed protein
LOC_Os03g53750Os.10141.1.S1_at11/113+30760719..30765124Narf, putative, expressed
LOC_Os03g53760OsAffx.25706.1.S1_x_at11/113+30766042..30772826Helicase associated domain family protein, expressed
LOC_Os03g53760Os.47539.1.S1_at11/113+30766042..30772826Helicase associated domain family protein, expressed
LOC_Os03g53760Os.47539.1.S1_s_at11/113+30766042..30772826Helicase associated domain family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0003677molecular_functionDNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.14952.1.A1_at--533--5291Chr03:30745686..30745710 (25 bp)
GAATGGTTCCATTACACTTGTGTTG
LOC_Os03g53700
Os.14952.1.A1_at--322--2971Chr03:30745741..30745765 (25 bp)
AATGGTTTTGCCCAACATGCAGGAA
LOC_Os03g53700
Os.14952.1.A1_at--256--6031NONE
GAGAGGTTCTCCAAAGTTGTGCGAA
NONE
Os.14952.1.A1_at--871--1091Chr03:30746453..30746477 (25 bp)
AGTGGCTCCACTGCTCATGTGTTAG
LOC_Os03g53700
Os.14952.1.A1_at--777--3751Chr03:30746466..30746490 (25 bp)
CTCATGTGTTAGTTCGGCGCTCGGA
LOC_Os03g53700
Os.14952.1.A1_at--238--10091Chr03:30746578..30746602 (25 bp)
TAGGGTGCGCATTACTTGACAGTTA
LOC_Os03g53700
Os.14952.1.A1_at--228--3051Chr03:30746700..30746724 (25 bp)
AATCTCTCCCTGTGAGACAGTTGTT
LOC_Os03g53700
Os.14952.1.A1_at--494--7771Chr03:30746733..30746757 (25 bp)
GGTGAAATGCTTTACTGCTCAGTGC
LOC_Os03g53700
Os.14952.1.A1_at--737--1591Chr03:30746758..30746782 (25 bp)
AGCTGCTGTAGTCTCCCAAATGTTG
LOC_Os03g53700
Os.14952.1.A1_at--1011--6411Chr03:30746829..30746853 (25 bp)
GATCTCACATGATTCTGCTCTTTTG
LOC_Os03g53700
Os.14952.1.A1_at--453--5931NONE
GAGCATCGCATCTTGCTTAGTAGAA
NONE
Target Sequence 
GAATGGTTCCATTACACTTGTGTTGGTCTGACACCAGAAACGAGATTCAAGGGGAAATGGTTTTGCCCAACATGCAGGAA
TCTTTAATGAGAGGTTCTCCAAAGTTGTGCGAAGCAGGACAGTGGCTCCACTGCTCATGTGTTAGTTCGGCGCTCGGAGC
GGTTTCAGAAGATGCATGAGGGAATCCTCAGTAATGAGNTGGTCCAAAGTTGGTAGGATGCAAAATGGTGACAACTTTGG
AATTGTAGGGTGCGCATTACTTGACAGTTAACAGTGGGTTAAGGTTGTTGGTTCACCAGGTTTACTTTAGTTTGTCCATG
TATATGCAAGGGGCAACAGTAAGACTATATATATAAACTTGTTCAAAAATCTCTCCCTGTGAGACAGTTGTTCTTATAGT
GGTGAAATGCTTTACTGCTCAGTGCAGCTGCTGTAGTCTCCCAAATGTTGGCTACCAAGTANCCATTTCCATAGNTGGNG
AAGCTTCATCTCCACTGATCTCACATGATTCTGCTCTTTTGAGCATCGCATCTTGCTTAGTAGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.14952.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis