Browse Element(s) Details

Os.14975.1.S1_at

Description

gb:AK068108.1
DB_XREF= gi:32978126
TID=Os.14975.1
CNT=12
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.14975 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-201-B05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013131F09, full insert sequence.
FL= gb:AK104964.1 gb:AK068108.1 gb:AK105681.1 gb:AK099500.1
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os06g12590	11/11	Protein kinase domain containing protein, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os06g12540	Os.50302.1.S1_at	11/11	6	+	6795507..6797469	pentatricopeptide, putative, expressed
LOC_Os06g12550	OsAffx.4814.1.S1_at	11/11	6	+	6800972..6801358	hypothetical protein
LOC_Os06g12560	OsAffx.28216.1.S1_at	11/11	6	+	6807877..6810728	Zinc finger, C3HC4 type family protein, expressed
LOC_Os06g12560	Os.46458.2.S1_at	2/11	6	+	6807877..6810728	Zinc finger, C3HC4 type family protein, expressed
LOC_Os06g12570	OsAffx.4815.1.S1_at	11/11	6	+	6813709..6814191	hypothetical protein
LOC_Os06g12580	Os.49196.1.S1_at	11/11	6	+	6815407..6818817	expressed protein
LOC_Os06g12580	Os.10184.1.S1_s_at	11/11	6	+	6815407..6818817	expressed protein
LOC_Os06g12590	Os.14975.1.S2_at	11/11	6	+	6821983..6831863	Protein kinase domain containing protein, expressed
LOC_Os06g12590	Os.14975.1.S1_at	11/11	6	+	6821983..6831863	Protein kinase domain containing protein, expressed
LOC_Os06g12590	Os.12612.1.S1_at	1/11	6	+	6821983..6831863	Protein kinase domain containing protein, expressed
LOC_Os06g12600	Os.27745.1.A1_at	11/11	6	+	6841981..6847490	Fructokinase, putative, expressed

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Gene Ontology Classification

GO id	Type	Name
GO:0000165	biological_process	MAPKKK cascade
GO:0006952	biological_process	defense response
GO:0008219	biological_process	cell death
GO:0009414	biological_process	response to water deprivation
GO:0009621	biological_process	response to pathogenic fungi
GO:0009723	biological_process	response to ethylene stimulus
GO:0009744	biological_process	response to sucrose stimulus
GO:0010105	biological_process	negative regulation of ethylene mediated signaling pathway
GO:0010182	biological_process	sugar mediated signaling
GO:0046777	biological_process	protein amino acid autophosphorylation
GO:0005789	cellular_component	endoplasmic reticulum membrane
GO:0004674	molecular_function	protein serine/threonine kinase activity
GO:0004709	molecular_function	MAP kinase kinase kinase activity
GO:0005515	molecular_function	protein binding
GO:0016301	molecular_function	kinase activity

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.14975.1.S1_at--787--413	1	Chr06:6828380..6828404 (25 bp)	CGCTGCAGTGGTTGCATCCTCAATG	LOC_Os06g12590
Os.14975.1.S1_at--1099--373	1	Chr06:6828362..6828386 (25 bp)	CTCAATGGTTGTCGCTGCAGCTAAA	LOC_Os06g12590
Os.14975.1.S1_at--1090--649	1	Chr06:6828328..6828352 (25 bp)	GATATCAAACTCGACGTGCCTGTTG	LOC_Os06g12590
Os.14975.1.S1_at--788--911	1	Chr06:6828290..6828314 (25 bp)	TGCTGCTGCAGTTGTGGCTACAACT	LOC_Os06g12590
Os.14975.1.S1_at--815--183	1	Chr06:6828246..6828270 (25 bp)	ACGAATACTTGGAACCTGGTTGTCA	LOC_Os06g12590
Os.14975.1.S1_at--1094--315	1	Chr06:6828222..6828246 (25 bp)	AATTGCTTAGTTTGCCAAGTTCTTC	LOC_Os06g12590
Os.14975.1.S1_at--995--511	1	Chr06:6828193..6828217 (25 bp)	GCAAATGAATTGATCCCGAAGGGTA	LOC_Os06g12590
Os.14975.1.S1_at--484--959	1	Chr06:6828134..6828158 (25 bp)	TCATGGACAAACTAGTGTTCCCGAG	LOC_Os06g12590
Os.14975.1.S1_at--564--609	1	Chr06:6828069..6828093 (25 bp)	GAGTCTCTGACAAGTCGGTTGGGAC	LOC_Os06g12590
Os.14975.1.S1_at--190--483	1	Chr06:6828039..6828063 (25 bp)	GCTCAAGATCTGATATTGCCCTAGA	LOC_Os06g12590
Os.14975.1.S1_at--263--257	1	Chr06:6827763..6827991 (25 bp)	AACGTGTTGGGCTAGGATCCTTTGG	LOC_Os06g12590

Target Sequence

CGCTGCAGTGGTTGCATCCTCAATGGTTGTCGCTGCAGCTAAATCTAACAGTGATATCAAACTCGACGTGCCTGTTGCTG
CTGCGGCGACTGCTGCTGCAGTTGTGGCTACAACTGCTGCTGTTAACAAGCAGTACGAATACTTGGAACCTGGTTGTCAA
TTGCTTAGTTTGCCAAGTTCTTCAGGGGCAAATGAATTGATCCCGAAGGGTAGACATGACTTCTGGGATAATCAGCTTGA
AATTGATCATGGACAAACTAGTGTTCCCGAGAAAGAAAAAGATTTGGTTGAAGTACCTCAGGAAGCTGAAAGAGTCTCTG
ACAAGTCGGTTGGGACTGAAAGCTCAAGATCTGATATTGCCCTAGATGGTGTTGCAGAGTTTGAAATCCAATGGGAAGAG
ATCACTCTGGGAGAACGTGTTGGGCTAGGATCCTTTGG

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis