Browse Element(s) Details


Os.15136.1.A1_s_at

Description gb:CR289323
DB_XREF= gi:44675889
DB_XREF=CR289323
CLONE=p774c02p3
TID=Os.15136.1
CNT=2
FEA=EST
TIER=ConsEnd
STK=2
UG=Os.15136 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with moderate similarity to protein ref:NP_201260.1 (A.thaliana) putative protein (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3852011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g38470OsAffx.4014.1.S1_at11/114+22646912..22647586hypothetical protein
LOC_Os04g38480Os.16934.1.S1_at10/114+22648195..22653439BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative, expressed
LOC_Os04g38490OsAffx.26376.1.S1_at11/114+22659900..22660804hypothetical protein
LOC_Os04g38500OsAffx.4015.1.S1_at11/114+22661715..22662312hypothetical protein
LOC_Os04g38510OsAffx.14191.1.S1_at11/114+22664388..22664913hypothetical protein
LOC_Os04g38520Os.15136.1.A1_s_at11/114+22671226..22673671expressed protein
LOC_Os04g38520Os.13740.1.A1_at11/114+22671226..22673671expressed protein
LOC_Os04g38530Os.20067.1.S1_at11/114+22674694..22679574Aldose 1-epimerase family protein, expressed
LOC_Os04g38540Os.27545.1.S1_at11/114+22683509..22686551Aldose 1-epimerase family protein, expressed
LOC_Os04g38550Os.24305.1.A1_at9/114+22689474..22690986expressed protein
LOC_Os04g38560Os.18265.1.S1_at11/114+22691327..22693357Pectinesterase family protein, expressed
LOC_Os04g38560OsAffx.23254.1.S1_x_at1/114+22691327..22693357Pectinesterase family protein, expressed
LOC_Os04g38560Os.54835.1.S1_s_at1/114+22691327..22693357Pectinesterase family protein, expressed
LOC_Os04g38570Os.48287.1.S1_at11/114+22695700..22702202multidrug resistance P-glycoprotein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.15136.1.A1_s_at--392--4831Chr04:22672660..22672684 (25 bp)
GCTCAAGGCAGCACATTGTACTGCA
LOC_Os04g38520
Os.15136.1.A1_s_at--925--1491Chr04:22672669..22672693 (25 bp)
AGCACATTGTACTGCAAAGGGCATG
LOC_Os04g38520
Os.15136.1.A1_s_at--77--3991Chr04:22672695..22672719 (25 bp)
CGGTGGCAAGCGGTGTATCTTTGAC
LOC_Os04g38520
Os.15136.1.A1_s_at--205--7751Chr04:22672706..22672730 (25 bp)
GGTGTATCTTTGACGGCTGCAGCAA
LOC_Os04g38520
Os.15136.1.A1_s_at--693--8071Chr04:22672742..22672766 (25 bp)
GGAGCACGCCTCTGTGCAAAGCACA
LOC_Os04g38520
Os.15136.1.A1_s_at--392--4451Chr04:22672749..22672773 (25 bp)
GCCTCTGTGCAAAGCACACGGTGGC
LOC_Os04g38520
Os.15136.1.A1_s_at--846--5311Chr04:22672792..22672816 (25 bp)
GAAGGTGGCGGCGTCTGCCCAAAGA
LOC_Os04g38520
Os.15136.1.A1_s_at--347--4511Chr04:22673505..22673529 (25 bp)
GCCGATTTGAACTTCTTTGGCTTTT
LOC_Os04g38520
Os.15136.1.A1_s_at--609--8751Chr04:22673578..22673602 (25 bp)
TGTACATTCATGTCCGTGGCAATTG
LOC_Os04g38520
Os.15136.1.A1_s_at--530--7531Chr04:22673593..22673617 (25 bp)
GTGGCAATTGTCCTGAACACCTTCT
LOC_Os04g38520
Os.15136.1.A1_s_at--69--5511Chr04:22673607..22673631 (25 bp)
GAACACCTTCTCATGTCAGTTTAGT
LOC_Os04g38520
Target Sequence 
GCTCAAGGCAGCACATTGTACTGCAAAGGGCATGACGGTGGCAAGCGGTGTATCTTTGACGGCTGCAGCAAAGGTGCTGG
GGGGAGCACGCCTCTGTGCAAAGCACACGGTGGCGGGAAGCGATGCATGTTCGAAGGTGGCGGCGTCTGCCCAAAGAGCG
TCCANNNNNGNANNGANNNCTNNNNGNCGCNCGNNNNNNNNNNNCNCTNNTCGGTGNCAGCTTCAGGAACGNCCGACATG
GATAAGCTCTGAATTTNGCTTCTCCGGCTNGCCGAATTCTGTTAGTTTNGTTGTGNTACATAAACAANGCNATTTANNTT
NGCCGATTTGAACTTCTTTGGCTTTTTTTCNCTTTGTCTAGATAAATGGTCCGTNGTTGCTTTAGTCCNAGTCATTTGTA
CATTCATGTCCGTGGCAATTGTCCTGAACACCTTCTCATGTCAGTTTAGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.15136.1.A1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis