Browse Element(s) Details


Os.15144.1.S1_a_at

Description gb:AK101904.1
DB_XREF= gi:32987113
TID=Os.15144.1
CNT=20
FEA=FLmRNA
TIER=FL+Stack
STK=6
UG=Os.15144 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033146A10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033071E01, full insert sequence.
FL= gb:AK101904.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g4055011/11amidase, hydantoinase/carbamoylase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g40510Os.17170.1.S1_at11/1112+25029621..25034664Calcineurin B-like protein 3, putative, expressed
LOC_Os12g40520Os.49666.1.S1_at10/1112+25037100..25044087MATH domain containing protein, expressed
LOC_Os12g40530Os.7597.1.S1_at11/1112+25045352..25048773transposon protein, putative, Mutator sub-class, expressed
LOC_Os12g40540Os.53316.1.S1_at11/1112+25048998..25052450expressed protein
LOC_Os12g40550Os.15144.1.S1_a_at11/1112+25053401..25058014amidase, hydantoinase/carbamoylase family protein, expressed
LOC_Os12g40560Os.8370.1.S1_at11/1112+25058218..25064696FLK, putative, expressed
LOC_Os12g40570Os.19013.1.S1_at11/1112+25067430..25070610WRKY DNA binding domain containing protein, expressed
LOC_Os12g40580NANA12+25080253..25080552retrotransposon protein, putative, unclassified
LOC_Os12g40590Os.55414.1.S1_at11/1112+25082483..25086214Helix-loop-helix DNA-binding domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006508biological_processproteolysis
GO:0008237molecular_functionmetallopeptidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.15144.1.S1_a_at--34--1451Chr12:25054503..25054527 (25 bp)
AGAACCGTGGCGTGCTATTATCAGA
LOC_Os12g40550
Os.15144.1.S1_a_at--53--6371Chr12:25054459..25054483 (25 bp)
GATCCACCTGCTCTATCTGACAAAT
LOC_Os12g40550
Os.15144.1.S1_a_at--1098--711Chr12:25054362..25054383 (22 bp)
ATGATTCACTCTTCATGGCCAGAAT
LOC_Os12g40550
Os.15144.1.S1_a_at--241--2311Chr12:25053903..25053925 (23 bp)
AAAGGTTACAGCCACAAGCCCGAAG
LOC_Os12g40550
Os.15144.1.S1_a_at--62--2671Chr12:25053888..25053912 (25 bp)
AAGCCCGAAGAATATGCGTCACCAG
LOC_Os12g40550
Os.15144.1.S1_a_at--391--8231Chr12:25053829..25053853 (25 bp)
GGCAATGGCCAGATTATCCCTGCAG
LOC_Os12g40550
Os.15144.1.S1_a_at--251--551Chr12:25053814..25053838 (25 bp)
ATCCCTGCAGTGAGCTTAGACATGG
LOC_Os12g40550
Os.15144.1.S1_a_at--730--2951Chr12:25053774..25053798 (25 bp)
AATGAGTTCAGATCACCCAACACCT
LOC_Os12g40550
Os.15144.1.S1_a_at--108--2171Chr12:25053755..25053779 (25 bp)
ACACCTTCGTGTTCCTGCAATGGAA
LOC_Os12g40550
Os.15144.1.S1_a_at--1013--9851Chr12:25053722..25053746 (25 bp)
TACAGCAATTCCTCGCGTGGCAAAA
LOC_Os12g40550
Os.15144.1.S1_a_at--404--2531Chr12:25053594..25053618 (25 bp)
AACTAGTCCGTATGTTTTCAGCGAG
LOC_Os12g40550
Target Sequence 
AGAACCGTGGCGTGCTATTATCAGAGTTCAAGATCATAAATCAGGATCCACCTGCTCTATCTGACAAATCAGTCATCAGC
GCAATGGAATTTGCTGCAAAACAGTTGAACCTCGAATATAAGCTGATGATTAGCAGAGCTTATCATGATTCACTCTTCAT
GGCCAGAATATCACCAATGGGTATGATCTTCATTCCATGTTACAAAGGTTACAGCCACAAGCCCGAAGAATATGCGTCAC
CAGAGGACATGGCGAACGGTGTGAAGGTGCTTGCCTTGGCAATGGCCAGATTATCCCTGCAGTGAGCTTAGACATGGAGG
AAGGAAGGAATCAATGAGTTCAGATCACCCAACACCTTCGTGTTCCTGCAATGGAAACACGATGTACAGCAATTCCTCGC
GTGGCAAAACAAAGCCATGGTGATTCTTCAGGAATAATAAATTAATAACATTTGGAAGCCATGGTGATTCTTCAGGAATA
ATAGATTGATAACATTTGGATGGGCAGCAGAAAACTAGTCCGTATGTTTTCAGCGAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.15144.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis