Browse Element(s) Details


Os.15211.1.S1_at

Description gb:BI811522
DB_XREF= gi:15858710
DB_XREF=P002B03
CLONE=P002B03
TID=Os.15211.1
CNT=1
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.15211 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g209803/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g20950Os.10252.1.S1_s_at11/112+12387114..12394238expressed protein
LOC_Os02g20950OsAffx.24356.1.S1_at10/112+12387114..12394238expressed protein
LOC_Os02g20960OsAffx.12140.1.S1_at10/112+12396205..12397782expressed protein
LOC_Os02g20970Os.33238.2.S1_at11/112+12398104..12405414C2 domain containing protein, expressed
LOC_Os02g20970Os.33238.1.S1_x_at11/112+12398104..12405414C2 domain containing protein, expressed
LOC_Os02g20980OsAffx.3097.1.S1_s_at9/112+12414560..12421423hypothetical protein
LOC_Os02g20980Os.12010.1.S1_at7/112+12414560..12421423hypothetical protein
LOC_Os02g20980Os.12010.1.S1_x_at6/112+12414560..12421423hypothetical protein
LOC_Os02g20980OsAffx.3097.1.S1_x_at3/112+12414560..12421423hypothetical protein
LOC_Os02g20980Os.15211.1.S1_at3/112+12414560..12421423hypothetical protein
LOC_Os02g20980Os.43072.1.S1_x_at2/112+12414560..12421423hypothetical protein
LOC_Os02g20980Os.43072.1.S1_at2/112+12414560..12421423hypothetical protein
LOC_Os02g20990NANA2+12428182..12428559hypothetical protein
LOC_Os02g21009OsAffx.24357.1.S1_at11/112+12432283..12451253Vacuolar cation/proton exchanger 1c, putative, expressed
LOC_Os02g21009OsAffx.12141.1.S1_at11/112+12432283..12451253Vacuolar cation/proton exchanger 1c, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009935biological_processnutrient import
GO:0005886cellular_componentplasma membrane
GO:0008553molecular_functionhydrogen-exporting ATPase activity, phosphorylative mechanism
GO:0016887molecular_functionATPase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.15211.1.S1_at--883--7851NONE
GGTTTCAATCCACGTTAGCAAGCTT
NONE
Os.15211.1.S1_at--531--3191NONE
CAATCCACGTTAGCAAGCTTATGCG
NONE
Os.15211.1.S1_at--849--7651NONE
GGGATGGATCCAATTTGGAGCACCT
NONE
Os.15211.1.S1_at--941--811Chr02:12414617..12414640 (24 bp)
ATGGACTCAATTTTCACGGGCTCAA
LOC_Os02g20980
Os.15211.1.S1_at--467--5711Chr02:12414617..12414637 (21 bp)
GACTCAATTTTCACGGGCTCAAACT
LOC_Os02g20980
Os.15211.1.S1_at--344--151Chr02:12414605..12414631 (25 bp)
ATTTTCACGGGCTCAAACTAATGAA
LOC_Os02g20980
Os.15211.1.S1_at--655--9591NONE
TCATATGTATGTTGTCAGCCAATAG
NONE
Os.15211.1.S1_at--819--6631NONE
GTTGTCAGCCAATAGCTGTCTCTTG
NONE
Os.15211.1.S1_at--1117--3371NONE
CAGCCAATAGCTGTCTCTTGAAAGG
NONE
Os.15211.1.S1_at--340--3091NONE
AATAAGCCGGTCCTTGCATAATATT
NONE
Os.15211.1.S1_at--334--4491NONE
GCCGGTCCTTGCATAATATTGAACA
NONE
Target Sequence 
GGTTTCAATCCACGTTAGCAAGCTTATGCGCACTCAAGATGAAGGAAGGGGATGGATCCAATTTGGAGCACCTCTTTCTG
ACCAGATGGACTCAATTTTCACGGGCTCAAACTAATGAAAAATTAGTTCATATGTATGTTGTCAGCCAATAGCTGTCTCT
TGAAAGGTTCTCACACCTTACAGATCAGTAGATCACCATGGGCAAGGTCAAGATTGGAAGGAAGTGAGAACATAACATGC
ATCTGATGAAGGAATTGACAGCAGGATAGACTGAGAATAAGCCGGTCCTTGCATAATATTGAACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.15211.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis