Browse Element(s) Details


Os.15237.1.S1_at

Description gb:AF442490.1
DB_XREF= gi:17066671
TID=Os.15237.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.15237 (NCBI UniGene Cluster)
UG_TITLE=Unknown mRNA
DEF=Oryza sativa unknown mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g3082011/11expressed protein
LOC_Os08g385303/11hypothetical protein
LOC_Os11g294701/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g30770OsAffx.19092.1.S1_at11/1111+17424020..17424454hypothetical protein
LOC_Os11g30780NANA11+17430176..17430932hypothetical protein
LOC_Os11g30790Os.52356.1.S1_at2/1111+17431614..17437815expressed protein
LOC_Os11g30810Os.5230.1.S1_at11/1111+17440824..17442659Sulfotransferase domain containing protein, expressed
LOC_Os11g30820Os.15237.1.S1_at11/1111+17443380..17445669expressed protein
LOC_Os11g30830NANA11+17450136..17450678Flavonol sulfotransferase, putative
LOC_Os11g30840NANA11+17450910..17454486retrotransposon protein, putative, unclassified
LOC_Os11g30850OsAffx.22385.1.S1_x_at3/1111+17457815..17459028retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g30850OsAffx.20329.1.S1_at1/1111+17457815..17459028retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g30860NANA11+17459206..17462217retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g30870Os.39764.1.S1_at6/1111+17462561..17464283hypothetical protein
LOC_Os11g30870Os.39764.1.S1_x_at5/1111+17462561..17464283hypothetical protein
LOC_Os11g30880NANA11+17467650..17468333retrotransposon protein, putative, unclassified
LOC_Os11g30890OsAffx.19093.1.S1_at10/1111+17470191..17473729Sulfotransferase domain containing protein
LOC_Os11g30890OsAffx.10222.1.S1_x_at2/1111+17470191..17473729Sulfotransferase domain containing protein
LOC_Os11g30890OsAffx.6693.1.S1_at1/1111+17470191..17473729Sulfotransferase domain containing protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.15237.1.S1_at--129--4072Chr11:17444175..17444195 (21 bp)
CGAGGCTTGGTTGCCATGAAGCAGT
LOC_Os11g30820
Os.15237.1.S1_at--940--5373Chr11:17443655..17443989 (25 bp)
GAAGAAGCTTGGAGTGATTTTGATC
LOC_Os11g30820
Os.15237.1.S1_at--573--8212Chr11:17443550..17443574 (25 bp)
GGCAATAGAAGACGGACCACCCTTG
LOC_Os11g30820
Os.15237.1.S1_at--564--8092Chr11:17443537..17443561 (25 bp)
GGACCACCCTTGTAGCTTAGAGATT
LOC_Os11g30820
Os.15237.1.S1_at--998--4892Chr11:17443523..17443547 (25 bp)
GCTTAGAGATTTTTCCTCTCAATCT
LOC_Os11g30820
Os.15237.1.S1_at--1083--6532Chr11:17443516..17443540 (25 bp)
GATTTTTCCTCTCAATCTATCTTAT
LOC_Os11g30820
Os.15237.1.S1_at--916--10335Chr10:4361459..4361483 (25 bp)
TTTTAAATGTTACAGACTTGTTTCA
NONE
Os.15237.1.S1_at--539--6834Chr10:4361478..4361502 (25 bp)
GTTTCAATTAAAGTCTTTCATGCAA
NONE
Os.15237.1.S1_at--201--1412Chr11:17443449..17443473 (25 bp)
AGACATGTCATGTATTACTTAGTTT
LOC_Os11g30820
Os.15237.1.S1_at--442--9896Chr11:13300750..13300771 (22 bp)
TACTTAGTTTTGCTATGGTGATGGA
NONE
Os.15237.1.S1_at--1093--10173Chr10:4361570..4361594 (25 bp)
TATATCTATGGTTGAACTTCCCGTG
NONE
Target Sequence 
CGAGGCTTGGTTGCCATGAAGCAGTTCCTGCAACATAAAAAAGGTGGGCAACAAGGACTTGCTGCTGCTTGGCAGCACAC
ACACGAGATGCAACAAGGAAATAATGAACAGCTATGCAACCAGAGGACAGAAGAAGCTTGGAGTGATTTTGATCAAGAGG
GAGGAAATGAGATTGATGATGATGAGGGCAATGATTTTGATCTTGAGGAAGGAAATGGGATTCCTGAAGAAGATGGCAAT
AGAAGACGGACCACCCTTGTAGCTTAGAGATTTTTCCTCTCAATCTATCTTATTTTAAATGTTACAGACTTGTTTCAATT
AAAGTCTTTCATGCAAGACATGTCATGTATTACTTAGTTTTGCTATGGTGATGGATGATAAATATTTTAGAACAATTTGG
TTATATATCTATGGTTGAACTTCCCGTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.15237.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis