Browse Element(s) Details


Os.15257.1.S1_at

Description gb:AK072106.1
DB_XREF= gi:32982129
TID=Os.15257.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.15257 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023080G08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013116A07, full insert sequence.
FL= gb:AK072106.1 gb:AK058361.1 gb:AK099167.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g4304011/11Transferase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g43000OsAffx.6119.1.S1_at11/118+27042788..27046420NB-ARC domain containing protein, expressed
LOC_Os08g43010OsAffx.17486.1.S1_at11/118+27048850..27052404NB-ARC domain containing protein, expressed
LOC_Os08g43020NANA8+27063639..27064597Transferase family protein
LOC_Os08g43030Os.2741.4.S1_x_at2/118+27066547..27067545retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g43040Os.15257.1.S1_at11/118+27069428..27072050Transferase family protein, expressed
LOC_Os08g43050Os.49522.1.S1_at10/118+27073030..27077088NB-ARC domain containing protein, expressed
LOC_Os08g43060Os.10140.1.S1_at11/118+27077595..27084173expressed protein
LOC_Os08g43070OsAffx.6120.1.S1_x_at11/118+27090325..27091116Helix-loop-helix DNA-binding domain containing protein
LOC_Os08g43080OsAffx.29641.1.S1_at11/118+27096403..27096899DNA polymerase delta subunit 4 family, putative

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Gene Ontology Classification
GO idTypeName
GO:0016740molecular_functiontransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.15257.1.S1_at--967--1271Chr08:27071473..27071497 (25 bp)
AGATCGCTACTTCGGCAATGCACTT
LOC_Os08g43040
Os.15257.1.S1_at--148--7231Chr08:27071498..27071522 (25 bp)
GTCGACTTGAAAGTAGCCTCCACAG
LOC_Os08g43040
Os.15257.1.S1_at--38--4471Chr08:27071513..27071537 (25 bp)
GCCTCCACAGTTAGGGACATTGTCT
LOC_Os08g43040
Os.15257.1.S1_at--208--8151Chr08:27071541..27071565 (25 bp)
GGACACTGGATGTAACTGCTGCCCA
LOC_Os08g43040
Os.15257.1.S1_at--35--1451Chr08:27071571..27071595 (25 bp)
AGAACGCATTGGGACGCCTTGACGA
LOC_Os08g43040
Os.15257.1.S1_at--1086--10451Chr08:27071681..27071705 (25 bp)
TTACGAATGGTCTCTTGGCTAGGCA
LOC_Os08g43040
Os.15257.1.S1_at--400--1311Chr08:27071745..27071769 (25 bp)
AGATGATGTCTCGTGCGGAGTCTGT
LOC_Os08g43040
Os.15257.1.S1_at--1057--7291Chr08:27071768..27071792 (25 bp)
GTGCGTGGCGGATTTGTTTATATGA
LOC_Os08g43040
Os.15257.1.S1_at--1160--6051Chr08:27071861..27071885 (25 bp)
GAGTTCGAGCGACTGTTTTATGCCA
LOC_Os08g43040
Os.15257.1.S1_at--582--711Chr08:27071920..27071944 (25 bp)
ATGATGCATGTTTTCTGTTCTATTA
LOC_Os08g43040
Os.15257.1.S1_at--83--3092Chr08:27071979..27072003 (25 bp)
AATACCTCCATATATTTTGGTGGCA
LOC_Os08g43040
Target Sequence 
AGATCGCTACTTCGGCAATGCACTTGTCGACTTGAAAGTAGCCTCCACAGTTAGGGACATTGTCTTGGGGACACTGGATG
TAACTGCTGCCCAGATAAAGAACGCATTGGGACGCCTTGACGATGAGATGCTGCAGTCGGCGATAGACTACAATGAGATG
GCAGGGATGCCCAACAAGCATACCAAGGGAAACCTGCCAGATACAGAATTACGAATGGTCTCTTGGCTAGGCATGCCAGT
TTATGATGCGGATTTTGGGTGGGGGAAGCCGGAGATGATGTCTCGTGCGGAGTCTGTGCGTGGCGGATTTGTTTATATGA
TGGATGGCATTGACAACGATGGGGGTGGCGTGCGTGTGCTCATGTGTATGGAGGCACGAAAGATGGAGGAGTTCGAGCGA
CTGTTTTATGCCAAGTTTGCACAATGAAGAAACTACCTAGCTAGAACATGATGCATGTTTTCTGTTCTATTATCAATAAT
GGATGTTTCATGTAATAATATAACCAAATACCTCCATATATTTTGGTGGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.15257.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis