Browse Element(s) Details


Os.15296.1.S1_at

Description gb:CR283151
DB_XREF= gi:44669717
DB_XREF=CR283151
CLONE=y841h03p3
TID=Os.15296.1
CNT=8
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.15296 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein ref:NP_179126.1 (A.thaliana) putative lysosomal acid lipase (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g0159011/11ab-hydrolase associated lipase region family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g01530NANA9+378642..384737retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g01540NANA9+385054..388015retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g01550NANA9+391702..394663retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g01560Os.10703.2.S1_x_at1/119+394980..401077retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g01570Os.46785.2.S1_x_at5/119+401813..405775retrotransposon protein, putative, Ty1-copia subclass
LOC_Os09g01580NANA9+407391..407723hypothetical protein
LOC_Os09g01590Os.15296.1.S1_at11/119+409601..418217ab-hydrolase associated lipase region family protein, expressed
LOC_Os09g01590Os.9810.1.S1_at4/119+409601..418217ab-hydrolase associated lipase region family protein, expressed
LOC_Os09g01600Os.25526.1.S1_at11/119+421295..426050expressed protein
LOC_Os09g01600Os.40235.1.S1_at2/119+421295..426050expressed protein
LOC_Os09g01600Os.27457.1.S1_at2/119+421295..426050expressed protein
LOC_Os09g01610Os.51948.1.S1_at11/119+428888..431329expressed protein
LOC_Os09g01620Os.52200.1.S1_at11/119+436172..441919RNA pseudouridylate synthase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0003824molecular_functioncatalytic activity
GO:0016298molecular_functionlipase activity
GO:0016787molecular_functionhydrolase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.15296.1.S1_at--144--7631Chr09:415992..416016 (25 bp)
GGGAAAACTGTTGCTTCAATACATC
LOC_Os09g01590
Os.15296.1.S1_at--112--8991Chr09:416041..416065 (25 bp)
TGAACCTCATCCATCATCGACAAAA
LOC_Os09g01590
Os.15296.1.S1_at--713--2411Chr09:416063..416087 (25 bp)
AAAAATCTGCACCATCTTTTTCAGA
LOC_Os09g01590
Os.15296.1.S1_at--37--9651Chr09:417690..417709 (20 bp)
TCAGATGATCAGGAAAGGCACTTTC
LOC_Os09g01590
Os.15296.1.S1_at--474--4231Chr09:417849..417873 (25 bp)
CCGATGTTCAGCGTACTATCAGAGA
LOC_Os09g01590
Os.15296.1.S1_at--873--9891Chr09:417862..417886 (25 bp)
TACTATCAGAGAGCTGGGATCTACA
LOC_Os09g01590
Os.15296.1.S1_at--1088--10771Chr09:417921..417945 (25 bp)
TTGATTTTGTTATGAGCGTGAAGGC
LOC_Os09g01590
Os.15296.1.S1_at--871--2331Chr09:417947..417971 (25 bp)
AAAGATGATGTTTATGTGGACCTAA
LOC_Os09g01590
Os.15296.1.S1_at--1100--4871Chr09:418005..418029 (25 bp)
GCTATTAGGATGTCTTCATGTGTAT
LOC_Os09g01590
Os.15296.1.S1_at--993--2091Chr09:418037..418061 (25 bp)
ACATCTGTACAGTATTGGTCCTCTC
LOC_Os09g01590
Os.15296.1.S1_at--739--7791Chr09:418053..418077 (25 bp)
GGTCCTCTCCCGATGTGAGTATGTA
LOC_Os09g01590
Target Sequence 
GGGAAAACTGTTGCTTCAATACATCAAGGATTGATTATTATTTGGAGTATGAACCTCATCCATCATCGACAAAAAATCTG
CACCATCTTTTTCAGATGATCAGGAAAGGCACTTTCGCNAAAGTNATGACTATNNGGNTTATTGGGNAAACNTAAGGCGC
TACGGTCATTTGCGTNCCTCCCGCANTTTGACCNNTAAGCAGCATACCAGAATCACNGCCCATATGGATGGGATATGGAG
GTCTTGATGCATTGGCTGATGTAACCGATGTTCAGCGTACTATCAGAGAGCTGGGATCTACANCCAGAACTTCTGTACAT
TGGTGACTATGGCCATATTGATTTTGTTATGAGCGTGAAGGCGAAAGATGATGTTTATGTGGACCTAATAAGATTTCTTA
GGGAAAATGGATGGCATAATAGCTATTAGGATGTCTTCATGTGTATAATAAAAACATCTGTACAGTATTGGTCCTCTCCC
GATGTGAGTATGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.15296.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis