Browse Element(s) Details


Os.15377.1.A1_at

Description gb:BM038136
DB_XREF= gi:16753757
DB_XREF=U003D04
CLONE=U003D04
TID=Os.15377.1
CNT=2
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.15377 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein ref:NP_175397.1 (A.thaliana) unknown protein (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g574307/11Leucine Rich Repeat family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g57370Os.22450.1.S1_at11/114+33929122..33931657Phospholipase/Carboxylesterase family protein, expressed
LOC_Os04g57380Os.57028.1.S1_at11/114+33931853..33933371Phospholipase/Carboxylesterase family protein, expressed
LOC_Os04g57390OsAffx.14457.1.S1_at11/114+33934285..33935850Phospholipase/Carboxylesterase family protein, expressed
LOC_Os04g57400Os.5851.1.S1_at11/114+33936430..339396275-methylthioribose kinase family protein, expressed
LOC_Os04g57410Os.5851.1.S1_at4/114+33942669..339453015-methylthioribose kinase family protein
LOC_Os04g57420Os.48312.1.S1_at11/114+33947430..33950345Reticulon family protein, expressed
LOC_Os04g57420Os.56185.1.S1_at1/114+33947430..33950345Reticulon family protein, expressed
LOC_Os04g57420Os.56185.1.S1_x_at1/114+33947430..33950345Reticulon family protein, expressed
LOC_Os04g57430Os.15377.1.A1_at7/114+33952558..33954118Leucine Rich Repeat family protein, expressed
LOC_Os04g57440Os.8032.1.S1_at11/114+33954276..33957672Cysteine protease 1 precursor, putative, expressed
LOC_Os04g57440Os.8032.1.S2_at11/114+33954276..33957672Cysteine protease 1 precursor, putative, expressed
LOC_Os04g57450NANA4+33959729..33963324retrotransposon protein, putative, unclassified
LOC_Os04g57460NANA4+33963645..33969798retrotransposon protein, putative, unclassified
LOC_Os04g57470Os.40360.1.S1_x_at1/114+33975806..33976564hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.15377.1.A1_at--465--6691Chr04:33953944..33953968 (25 bp)
GTTGCCTTCGGCTGTGGCAGCTGAA
LOC_Os04g57430
Os.15377.1.A1_at--79--6151Chr04:33953985..33954009 (25 bp)
GAGGTGGTGGCAACTGAACTGATCA
LOC_Os04g57430
Os.15377.1.A1_at--1038--7511Chr04:33953991..33954015 (25 bp)
GTGGCAACTGAACTGATCAGCGATC
LOC_Os04g57430
Os.15377.1.A1_at--986--6431Chr04:33954005..33954029 (25 bp)
GATCAGCGATCACCAACTTTGTCAG
LOC_Os04g57430
Os.15377.1.A1_at--298--6431Chr04:33954012..33954036 (25 bp)
GATCACCAACTTTGTCAGCGTTTTG
LOC_Os04g57430
Os.15377.1.A1_at--1149--10791Chr04:33954023..33954047 (25 bp)
TTGTCAGCGTTTTGTCGTTCAGATC
LOC_Os04g57430
Os.15377.1.A1_at--613--10251Chr04:33954033..33954057 (25 bp)
TTTGTCGTTCAGATCGCATGATTCC
LOC_Os04g57430
Os.15377.1.A1_at--51--491NONE
ATCTGATATCACATCCATAAGAGGG
NONE
Os.15377.1.A1_at--330--5311NONE
GAAGGATCAACCGAACATTCTTGCA
NONE
Os.15377.1.A1_at--673--10511Chr04:33954236..33954260 (25 bp)
TTCACTGATCAGATGTACTAGTTGT
NONE
Os.15377.1.A1_at--466--7011Chr04:33954250..33954275 (25 bp)
GTACTAGTTGTAGCTATATTCGACA
NONE
Target Sequence 
GTTGCCTTCGGCTGTGGCAGCTGAAGAAGGCGGCGGCGGCGGAGGTGGTGGCAACTGAACTGATCAGCGATCACCAACTT
TGTCAGCGTTTTGTCGTTCAGATCGCATGATTCCNAACTTTGTAACTGTTGGTCNATAAACGGAAAANGGCCTACCNATT
TGTNCCNNANNTCNNNCTGACGCATTGCTGACACNATCTGATATCACATCCATAAGAGGGAAGGATCAACCGAACATTCT
TGCATCCTTCCATTGTACCTNTATCGGTCNATTCACTGATCAGATGTACTAGTTGTAGCTATATTCGACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.15377.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis