Browse Element(s) Details


Os.15456.2.S1_x_at

Description gb:AK059549.1
DB_XREF= gi:32969567
TID=Os.15456.2
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.15456 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-029-F10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-029-F10, full insert sequence.
FL= gb:AK059549.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g508406/11BAH domain containing protein, expressed
LOC_Os06g360904/11ABC transporter family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g50810Os.52778.1.S1_at11/112+31032683..31034651expressed protein
LOC_Os02g50820Os.8916.1.S1_at11/112+31040376..31045820Permease I, putative, expressed
LOC_Os02g50830Os.9457.1.S1_at6/112+31049884..31053287expressed protein
LOC_Os02g50840Os.16883.1.S1_a_at11/112+31058195..31065395BAH domain containing protein, expressed
LOC_Os02g50840Os.15456.2.S1_x_at6/112+31058195..31065395BAH domain containing protein, expressed
LOC_Os02g50850Os.8858.1.S1_a_at11/112+31072266..31078068BAH domain containing protein, expressed
LOC_Os02g50860Os.5505.1.S1_at10/112+31078584..31082315RAC-like GTP binding protein ARAC10, putative, expressed
LOC_Os02g50870OsAffx.3030.1.S1_at11/112+31083439..31087772hypothetical protein
LOC_Os02g50880OsAffx.24819.1.S1_at11/112+31090304..31095320DegP protease, putative, expressed
LOC_Os02g50880Os.14754.2.S1_s_at11/112+31090304..31095320DegP protease, putative, expressed
LOC_Os02g50880Os.14754.1.A1_s_at11/112+31090304..31095320DegP protease, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0015692biological_processlead ion transport
GO:0005886cellular_componentplasma membrane
GO:0003677molecular_functionDNA binding
GO:0042626molecular_functionATPase activity, coupled to transmembrane movement of substances
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.15456.2.S1_x_at--429--6211Chr06:21114102..21114206 (25 bp)
GAGGCTTTTGATGAGCTGCTACTAC
LOC_Os06g36090
Os.15456.2.S1_x_at--53--10171Chr06:21114056..21114080 (25 bp)
TATACTCTGGGCAATTGGGTCGTAA
LOC_Os06g36090
Os.15456.2.S1_x_at--581--5191Chr06:21113896..21113920 (25 bp)
GCAATTCCTGGTGTGCCTAAAATCA
LOC_Os06g36090
Os.15456.2.S1_x_at--612--8891Chr06:21113840..21113864 (25 bp)
TGAGGTCAGTTCAGTTGCTGCGGAA
LOC_Os06g36090
Os.15456.2.S1_x_at--974--1271NONE
AGATCTGCATTTGAGCACATCTGCA
NONE
Os.15456.2.S1_x_at--130--5531Chr02:31065223..31065247 (25 bp)
GAAACGTTACATCTGTTTGCCCATG
LOC_Os02g50840
Os.15456.2.S1_x_at--448--10291Chr02:31065238..31065262 (25 bp)
TTTGCCCATGTAACTCTAGTGGACT
LOC_Os02g50840
Os.15456.2.S1_x_at--759--7651Chr02:31065270..31065294 (25 bp)
GGGATGACACTCGATCTGCAGTTCC
LOC_Os02g50840
Os.15456.2.S1_x_at--427--6411Chr02:31065282..31065306 (25 bp)
GATCTGCAGTTCCTGAATGCCTGTA
LOC_Os02g50840
Os.15456.2.S1_x_at--238--7051Chr02:31065304..31065328 (25 bp)
GTAAAGCGCATTCTGGTGTATCCAT
LOC_Os02g50840
Os.15456.2.S1_x_at--881--7431Chr02:31065319..31065343 (25 bp)
GTGTATCCATCGGTGCCTTGCAATG
LOC_Os02g50840
Target Sequence 
GAGGCTTTTGATGAGCTGCTACTACTGAAAAGAGGAGGGCAGGTGATATACTCTGGGCAATTGGGTCGTAATTCCCAGAA
AATGATTGAATATTTCGAGGCAATTCCTGGTGTGCCTAAAATCAAAGATAAGTACAATCCAGCTACATGGATGCTTGAGG
TCAGTTCAGTTGCTGCGGAAGTACGCTTAAATATGGACTTTGCTGAGTACTATAAGACATCAGACCTGTACAAGCAAAAC
AAGGTATTGGTGAATCAGCTAAGTCAACCAGAGCCAGGAACATCAGATCTGCATTTGAGCACATCTGCAGCCTTACATAT
GATTTAGATGTAACATGTATTTTATGTGGAAACGTTACATCTGTTTGCCCATGTAACTCTAGTGGACTATCCTGGGGGAT
GACACTCGATCTGCAGTTCCTGAATGCCTGTAAAGCGCATTCTGGTGTATCCATCGGTGCCTTGCAATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.15456.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis