Browse Element(s) Details


Os.15502.1.S1_at

Description gb:AK099899.1
DB_XREF= gi:32985108
TID=Os.15502.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.15502 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013114B09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013114B09, full insert sequence.
FL= gb:AK099899.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3271011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g32670Os.18486.1.S1_at11/119+19485779..19487685NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os09g32680Os.187.1.S1_s_at11/119+19498552..19502722G1/S-specific cyclin C-type, putative, expressed
LOC_Os09g32680Os.187.1.S1_at11/119+19498552..19502722G1/S-specific cyclin C-type, putative, expressed
LOC_Os09g32690Os.6646.1.S1_at11/119+19502940..19506572Zinc finger, C3HC4 type family protein, expressed
LOC_Os09g32690Os.8957.2.S1_x_at1/119+19502940..19506572Zinc finger, C3HC4 type family protein, expressed
LOC_Os09g32700Os.27781.1.S1_at11/119+19506638..19508742expressed protein
LOC_Os09g32710Os.15502.1.S1_at11/119+19508826..19512260expressed protein
LOC_Os09g32730NANA9+19518988..19519617Zinc finger, C3HC4 type family protein, expressed
LOC_Os09g32740Os.17307.1.S1_at11/119+19521706..19527377Ubiquitin carboxyl-terminal hydrolase family protein, expressed
LOC_Os09g32750NANA9+19532610..19540470expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.15502.1.S1_at--1019--5031Chr09:19509384..19509408 (25 bp)
GCAGAGACTAGATGTGATTCCACGC
LOC_Os09g32710
Os.15502.1.S1_at--680--1311Chr09:19509375..19509399 (25 bp)
AGATGTGATTCCACGCGCCACTGCA
LOC_Os09g32710
Os.15502.1.S1_at--218--5711Chr09:19509235..19509259 (25 bp)
GACTAGAGGTGATTCCACGCGCCAC
LOC_Os09g32710
Os.15502.1.S1_at--677--1971Chr09:19509139..19509163 (25 bp)
ACTGCAGCTGACCAGTGATCACTGA
LOC_Os09g32710
Os.15502.1.S1_at--255--3331Chr09:19509120..19509144 (25 bp)
CACTGAAATACTTCTCAGCTTTCTA
LOC_Os09g32710
Os.15502.1.S1_at--551--6131Chr09:19509069..19509093 (25 bp)
GAGGGCTCGGTGTAGCTCAAGATAT
LOC_Os09g32710
Os.15502.1.S1_at--419--3271Chr09:19509029..19509053 (25 bp)
CAACTTTTGCTGTAGCATCTAGGAG
LOC_Os09g32710
Os.15502.1.S1_at--42--8031Chr09:19509008..19509032 (25 bp)
GGAGGTTGCTTGGTTTATCTCGCTA
LOC_Os09g32710
Os.15502.1.S1_at--491--4931Chr09:19509001..19509025 (25 bp)
GCTTGGTTTATCTCGCTAAATCATT
LOC_Os09g32710
Os.15502.1.S1_at--623--5211Chr09:19508900..19508924 (25 bp)
GAATTTTAGTTCGTCCCATCTGATG
LOC_Os09g32710
Os.15502.1.S1_at--572--6711Chr09:19508892..19508916 (25 bp)
GTTCGTCCCATCTGATGTTCAATGT
LOC_Os09g32710
Target Sequence 
GCAGAGACTAGATGTGATTCCACGCGCCACTGCAGANCCTGAAGATCTATATGTCNAAGCCTGNAGNCANAAGAAGAGAG
TNGCATTCATCNCAGTAGGAAATCCGAAANCCNCTGCTAGTTCGAGTGGAACAACTTTAACTAAGAAGCANGAGACTAGA
GGTGATTCCACGCGCCACNNCAGAACCTGAAGATCTATATGNCAAATTTTCTGAGGATACAGACANAGTCCATATTTTAG
ATTGTTTTGNACTGCAGCTGACCAGTGATCACTGAAATACTTCTCAGCTTTCTAACATGAAAAGAACNATCAATACNAAA
GAGGGCTCGGTGTAGCTCAAGATATGGTTAAATTTTGAANCAACTTTTGCTGTAGCATCTAGGAGGTTGCTTGGTTTATC
TCGCTAAATCATTAGTATAGCCTTCANTTGTATTCTGGGATGCAATATTATTTTGTCANCCATTTTTCAGGTGTAATTTT
NCACAAAGATGAATTTTAGTTCGTCCCATCTGATGTTCAATGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.15502.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis