Browse Element(s) Details


Os.15572.1.S1_at

Description gb:AK063205.1
DB_XREF= gi:32973223
TID=Os.15572.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.15572 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-112-C12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-112-C12, full insert sequence.
FL= gb:AK063205.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g271409/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g27080Os.11585.1.S1_at11/119+16476014..16480747Plant protein family protein, expressed
LOC_Os09g27090OsAffx.17919.1.S1_at10/119+16483145..16485822F-box domain containing protein
LOC_Os09g27100OsAffx.17920.1.S1_at11/119+16486747..16489212F-box domain containing protein
LOC_Os09g27110OsAffx.17921.1.S1_at11/119+16490568..16492883expressed protein
LOC_Os09g27120OsAffx.30052.1.S1_at11/119+16494698..16495444hypothetical protein
LOC_Os09g27130Os.19439.2.S1_at9/119+16496639..16497930transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g27140Os.15572.1.S1_at9/119+16504479..16507811expressed protein
LOC_Os09g27150OsAffx.6412.1.S1_at11/119+16508512..16509982Protein kinase domain containing protein
LOC_Os09g27160Os.55222.1.S1_at11/119+16515132..16516766expressed protein
LOC_Os09g27160Os.56118.1.S1_at9/119+16515132..16516766expressed protein
LOC_Os09g27170NANA9+16518774..16519127hypothetical protein
LOC_Os09g27180NANA9+16520438..16524392retrotransposon protein, putative, Ty1-copia subclass
LOC_Os09g27190OsAffx.17925.1.S1_at11/119+16529343..16533773RWP-RK domain containing protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.15572.1.S1_at--662--1271Chr09:16504749..16504773 (25 bp)
AGATCACTATTCTTTCCAGCACACT
LOC_Os09g27140
Os.15572.1.S1_at--597--6991Chr09:16504716..16504740 (25 bp)
GTACGCAACTTGTTTGCAACAACTT
LOC_Os09g27140
Os.15572.1.S1_at--1038--6211Chr09:16504680..16504704 (25 bp)
GAGGCCCCAATGACATCCACAAGGT
LOC_Os09g27140
Os.15572.1.S1_at--391--2231Chr09:16504662..16504686 (25 bp)
ACAAGGTGTGTCTCATGCGGTGAAA
LOC_Os09g27140
Os.15572.1.S1_at--225--6971Chr09:16504589..16504613 (25 bp)
GTAGCTATGACCTGTATTATCACGA
LOC_Os09g27140
Os.15572.1.S1_at--56--171Chr09:16504574..16504598 (25 bp)
ATTATCACGAGTTCTTATTGTCAGT
LOC_Os09g27140
Os.15572.1.S1_at--45--7111Chr09:16504555..16504579 (25 bp)
GTCAGTAGATCCTTAATTTTGTCGA
LOC_Os09g27140
Os.15572.1.S1_at--1090--7511Chr09:16504529..16504553 (25 bp)
GTGGACTAACTCACCAAACTAGGCA
LOC_Os09g27140
Os.15572.1.S1_at--239--4851Chr09:16504489..16504513 (25 bp)
GCTACCCTAACAGCAATGGTGTGGC
LOC_Os09g27140
Os.15572.1.S1_at--1023--4551Chr09:16504453..16504477 (25 bp)
GCGCCACTGTTCGTAGCATGATTTT
NONE
Os.15572.1.S1_at--1080--2491Chr09:16504419..16504443 (25 bp)
AACATGGTTGAAGAAGGCGCTACTC
NONE
Target Sequence 
AGATCACTATTCTTTCCAGCACACTNCCGTTCAGTACGCAACTTGTTTGCAACAACTTATGNCTGCCGTGAGGCCCCAAT
GACATCCACAAGGTGTGTCTCATGCGGTGAAATGTTATTGGTCTTCAAGGACNTGAGGTAGTGATAATTCTGAACAATTG
AGTAGCTATGACCTGTATTATCACGAGTTCTTATTGTCAGTAGATCCTTAATTTTGTCGATGTGGACTAACTCACCAAAC
TAGGCATGGTAAGCAAATATTGCTACCCTAACAGCAATGGTGTGGCAAGTTTATTTNGCGCCACTGTTCGTAGCATGATT
TTACAACTTGCAACATGGTTGAAGAAGGCGCTACTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.15572.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis