Browse Element(s) Details


Os.15606.1.S1_at

Description gb:AK073628.1
DB_XREF= gi:32983651
TID=Os.15606.1
CNT=14
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.15606 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033051F19, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033051F19, full insert sequence.
FL= gb:AK067202.1 gb:AK073628.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0759011/11universal stress protein family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g07560OsAffx.23150.1.S1_at11/111+3618325..3622155Leucine Rich Repeat family protein, expressed
LOC_Os01g07560Os.16980.1.S1_s_at11/111+3618325..3622155Leucine Rich Repeat family protein, expressed
LOC_Os01g07570Os.20276.1.S1_at11/111+3627517..3635961Carboxyl-terminal proteinase, putative, expressed
LOC_Os01g07570Os.23670.1.A1_at11/111+3627517..3635961Carboxyl-terminal proteinase, putative, expressed
LOC_Os01g07570OsAffx.661.1.S1_x_at1/111+3627517..3635961Carboxyl-terminal proteinase, putative, expressed
LOC_Os01g07579NANA1+3638973..3639226NA
LOC_Os01g07590Os.15606.1.S1_at11/111+3642389..3647164universal stress protein family protein, expressed
LOC_Os01g07590Os.15606.1.S2_at6/111+3642389..3647164universal stress protein family protein, expressed
LOC_Os01g07600Os.54010.1.S1_at11/111+3649075..3653252expressed protein
LOC_Os01g07600OsAffx.23151.1.S1_x_at5/111+3649075..3653252expressed protein
LOC_Os01g07610Os.53998.1.S1_at11/111+3658490..3661001pentatricopeptide, putative, expressed
LOC_Os01g07620Os.57176.1.S1_at10/111+3661844..3662846expressed protein
LOC_Os01g07630Os.49171.1.A1_x_at11/111+3664278..3669811BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative, expressed
LOC_Os01g07630Os.49171.1.A1_at11/111+3664278..3669811BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006950biological_processresponse to stress
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.15606.1.S1_at--739--7911Chr01:3643505..3643529 (25 bp)
GGTTGGCAGAATCCATTGGGTCTTT
LOC_Os01g07590
Os.15606.1.S1_at--815--8611Chr01:3643521..3643545 (25 bp)
TGGGTCTTTTCATCAACGTTTTGCT
LOC_Os01g07590
Os.15606.1.S1_at--609--9711Chr01:3643533..3643557 (25 bp)
TCAACGTTTTGCTTATTCTCTACAG
LOC_Os01g07590
Os.15606.1.S1_at--402--10211Chr01:3643546..3643570 (25 bp)
TATTCTCTACAGTTCTAGGCCTAGC
LOC_Os01g07590
Os.15606.1.S1_at--199--3712Chr01:3643560..3643584 (25 bp)
CTAGGCCTAGCCCATATTCAATATA
LOC_Os01g07590
Os.15606.1.S1_at--87--2051Chr01:3643584..3643784 (25 bp)
ACTTGTTTCTTCAGGAGGTTCGTCA
LOC_Os01g07590
Os.15606.1.S1_at--92--5971Chr01:3644833..3644857 (25 bp)
GAGAAGTACTGCACGTCATTGGGAT
LOC_Os01g07590
Os.15606.1.S1_at--71--3351Chr01:3644844..3644868 (25 bp)
CACGTCATTGGGATTCTGGGCAACT
LOC_Os01g07590
Os.15606.1.S1_at--824--7591Chr01:3644861..3644885 (25 bp)
GGGCAACTGGTGGATCTATCGTGCA
LOC_Os01g07590
Os.15606.1.S1_at--677--3691Chr01:3644876..3644900 (25 bp)
CTATCGTGCATCGTATGGGAAGTGA
LOC_Os01g07590
Os.15606.1.S1_at--843--5871Chr01:3644932..3644956 (25 bp)
GAGCGTTTAACCAACTAGTGTGCAA
LOC_Os01g07590
Target Sequence 
GGTTGGCAGAATCCATTGGGTCTTTTCATCAACGTTTTGCTTATTCTCTACAGTTCTAGGCCTAGCCCATATTCAATATA
CTTGTTTCTTCAGGAGGTTCGTCATGGAGAGATGCATCAAAATCGTGCATTTTGGAAGGAGGAGGCTGTGCTTACAAGGA
AAGTTGATACTAAAGATTACAAGCTCTTTTCCATTGGAACAGTTGAATCAGCAGACAGAGAAGTACTGCACGTCATTGGG
ATTCTGGGCAACTGGTGGATCTATCGTGCATCGTATGGGAAGTGAGAGGGGTTGGTATAGCATCTCATATTCTGAGGAGC
GTTTAACCAACTAGTGTGCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.15606.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis