Browse Element(s) Details


Os.15639.1.S1_at

Description gb:AK102270.1
DB_XREF= gi:32987479
TID=Os.15639.1
CNT=10
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.15639 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033088P20, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033088P20, full insert sequence.
FL= gb:AK102270.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4037011/11CBL-interacting serine/threonine-protein kinase 24, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g40339NANA6+24013475..24013789NA
LOC_Os06g40348NANA6+24015153..24015455NA
LOC_Os06g40360Os.12403.1.S1_a_at11/116+24032808..24035795Leucine Rich Repeat family protein, expressed
LOC_Os06g40370Os.15639.1.S1_at11/116+24037940..24043788CBL-interacting serine/threonine-protein kinase 24, putative, expressed
LOC_Os06g40380Os.45976.1.S1_at5/116+24050222..24052115transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g40380Os.45976.1.S1_x_at2/116+24050222..24052115transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g40390NANA6+24054533..24055578hypothetical protein
LOC_Os06g40400NANA6+24055973..24056977transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g40410Os.46306.1.S1_x_at8/116+24060015..24066602transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0009628biological_processresponse to abiotic stimulus
GO:0009651biological_processresponse to salt stress
GO:0009735biological_processresponse to cytokinin stimulus
GO:0009737biological_processresponse to abscisic acid stimulus
GO:0009738biological_processabscisic acid mediated signaling
GO:0009845biological_processseed germination
GO:0005634cellular_componentnucleus
GO:0005737cellular_componentcytoplasm
GO:0004672molecular_functionprotein kinase activity
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.15639.1.S1_at--272--1651Chr06:24038429..24038453 (25 bp)
AGCGAAATCCGCACTGCTGAGGACA
LOC_Os06g40370
Os.15639.1.S1_at--378--8891Chr06:24038412..24038436 (25 bp)
TGAGGACAGCCACATGCTAGCCTGG
LOC_Os06g40370
Os.15639.1.S1_at--716--10531Chr06:24038351..24038375 (25 bp)
TTCAGGTTTTCAGGTTGTCAACTCC
LOC_Os06g40370
Os.15639.1.S1_at--252--1791Chr06:24038316..24038340 (25 bp)
ACCGAAGTTGCTCTTGCAGGCGCTG
LOC_Os06g40370
Os.15639.1.S1_at--565--8391Chr06:24038298..24038322 (25 bp)
GGCGCTGCATGTACCACATAGCTGA
LOC_Os06g40370
Os.15639.1.S1_at--975--6971Chr06:24038251..24038275 (25 bp)
GTACCATTCTAGTTTCATGCACCAG
LOC_Os06g40370
Os.15639.1.S1_at--414--6951Chr06:24038196..24038220 (25 bp)
GTAGATAGTCCATATAGCGGCCAAT
LOC_Os06g40370
Os.15639.1.S1_at--327--5591Chr06:24038067..24038091 (25 bp)
GAAATGCTCTCGTGTATGTCGGATC
LOC_Os06g40370
Os.15639.1.S1_at--143--6931Chr06:24038054..24038078 (25 bp)
GTATGTCGGATCTTCTTCACTTAGC
LOC_Os06g40370
Os.15639.1.S1_at--136--10511Chr06:24038039..24038063 (25 bp)
TTCACTTAGCCGTTCTCAAGGATGA
LOC_Os06g40370
Os.15639.1.S1_at--893--9151Chr06:24037945..24037969 (25 bp)
TGCCTACCACAACTTTTAAGCCTTT
LOC_Os06g40370
Target Sequence 
AGCGAAATCCGCACTGCTGAGGACAGCCACATGCTAGCCTGGCGCTAACGCAGCTGCAACTCCTGCNTCAGTGGGATTTT
CAGGTTTTCAGGTTGTCAACTCCTAGCCCGTCCACCGAAGTTGCTCTTGCAGGCGCTGCATGTACCACATAGCTGAGTCA
GTTCTTCAGTAGATCAGTGTACCATTCTAGTTTCATGCACCAGATGTTTTGGTAGTATTGTTAATATAGAACTGTAGATA
GTCCATATAGCGGCCAATTGTGCAGTCTGTATGTAACATGGATATAGATAGGTTTCTTGTGTAGTAGTAGTAAATAAGCT
GGTTATTTTGCTGCCATGAAACTGGAATGACTTGTGAACGTCGAAATGCTCTCGTGTATGTCGGATCTTCTTCACTTAGC
CGTTCTCAAGGATGAGAGCAATTAATCTTGTGATATAATCCTATATGTATTTCCAGGGCAGAAATGNAAAAGAAAAGGGA
AACCTGCCTACCACAACTTTTAAGCCTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.15639.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis