Browse Element(s) Details


Os.12403.1.S1_a_at

Description gb:AK061949.1
DB_XREF= gi:32971967
TID=Os.12403.1
CNT=34
FEA=FLmRNA
TIER=FL+Stack
STK=13
UG=Os.12403 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013002A13, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-042-E08, full insert sequence.
FL= gb:AK061949.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4036011/11Leucine Rich Repeat family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g40330OsAffx.28022.1.S1_x_at11/116+24004153..24008358expressed protein
LOC_Os06g40330Os.22469.1.S1_at11/116+24004153..24008358expressed protein
LOC_Os06g40339NANA6+24013475..24013789NA
LOC_Os06g40348NANA6+24015153..24015455NA
LOC_Os06g40360Os.12403.1.S1_a_at11/116+24032808..24035795Leucine Rich Repeat family protein, expressed
LOC_Os06g40370Os.15639.1.S1_at11/116+24037940..24043788CBL-interacting serine/threonine-protein kinase 24, putative, expressed
LOC_Os06g40380Os.45976.1.S1_at5/116+24050222..24052115transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g40380Os.45976.1.S1_x_at2/116+24050222..24052115transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g40390NANA6+24054533..24055578hypothetical protein
LOC_Os06g40400NANA6+24055973..24056977transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g40410Os.46306.1.S1_x_at8/116+24060015..24066602transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
GO:0006511biological_processubiquitin-dependent protein catabolism
GO:0009723biological_processresponse to ethylene stimulus
GO:0010105biological_processnegative regulation of ethylene mediated signaling pathway
GO:0005634cellular_componentnucleus
GO:0019005cellular_componentSCF ubiquitin ligase complex
GO:0004842molecular_functionubiquitin-protein ligase activity
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12403.1.S1_a_at--200--4811Chr06:24035200..24035224 (25 bp)
GCTCGTTTTTTGCAGGTATCCTCTT
LOC_Os06g40360
Os.12403.1.S1_a_at--905--10811Chr06:24035223..24035247 (25 bp)
TTGGGATAGTGCCTGTTCCTTGAGC
LOC_Os06g40360
Os.12403.1.S1_a_at--1004--8771Chr06:24035376..24035400 (25 bp)
TGTTCTTCTTTTCCGGTAATTCTTG
LOC_Os06g40360
Os.12403.1.S1_a_at--772--7071Chr06:24035391..24035415 (25 bp)
GTAATTCTTGTTAGTCGCGGACATC
LOC_Os06g40360
Os.12403.1.S1_a_at--345--6711Chr06:24035422..24035446 (25 bp)
GTTCGTAGAAACTTGGCTGCTCCAG
LOC_Os06g40360
Os.12403.1.S1_a_at--335--1111Chr06:24035453..24035477 (25 bp)
AGTGTCCAGGTGTTCGCGATCTCTT
LOC_Os06g40360
Os.12403.1.S1_a_at--358--9571Chr06:24035474..24035498 (25 bp)
TCTTCGGGTGCGTATGTTTGTTCCA
LOC_Os06g40360
Os.12403.1.S1_a_at--1098--10671Chr06:24035494..24035518 (25 bp)
TTCCAGTTCAGGTCTTGTGCGGCTT
LOC_Os06g40360
Os.12403.1.S1_a_at--1079--8651Chr06:24035690..24035714 (25 bp)
TGTGGTTGTTTTTCTACTCCGGATC
LOC_Os06g40360
Os.12403.1.S1_a_at--830--531Chr06:24035712..24035736 (25 bp)
ATCCCTGGTTTTGCTGGCAGATTGT
LOC_Os06g40360
Os.12403.1.S1_a_at--810--591Chr06:24035740..24035764 (25 bp)
ATGCTGTAATCTTTGTAACCTTCCC
LOC_Os06g40360
Target Sequence 
GCTCGTTTTTTGCAGGTATCCTCTTGGGATAGTGCCTGTTCCTTGAGCCTTCGGCTGCCATTAGCGTGGCACCCCTGCCC
CTCTATCCCAACCTTGGTCCTTGTTGATTACAGTCATTACATCATGCTGTTTTTTTTCCNATTGCGTCGTGTTCGGAGCT
CAAATATTGTCAAAGCGTGTTCTTCTTTTCCGGTAATTCTTGTTAGTCGCGGACATCNAACACCGTTCGTAGAAACTTGG
CTGCTCCAGTTCTTCAGTGTCCAGGTGTTCGCGATCTCTTCGGGTGCGTATGTTTGTTCCAGTTCAGGTCTTGTGCGGCT
TGCGGTATCGTGGGTAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTTGTGTTTGCAATGGGGGTTGCTT
CTTATGGTGTTTGTAGGGGTCTCCTGATATTATCCTTGGGGATCCGGCCTTTGCAAGGTGCATTCTGAAGGGCCTTGCCA
TTGACAACCCTGTGTGGTTGTTTTTCTACTCCGGATCCCTGGTTTTGCTGGCAGATTGTTGAATGCTGTAATCTTTGTAA
CCTTCCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12403.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis