Browse Element(s) Details


Os.22469.1.S1_at

Description gb:AK106613.1
DB_XREF= gi:32991822
TID=Os.22469.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.22469 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-112-G09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-112-G09, full insert sequence.
FL= gb:AK106613.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4033011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g40260OsAffx.31869.5.S1_x_at1/116+23979278..23983699retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g40270Os.45173.1.S1_x_at1/116+23984808..23989178retrotransposon protein, putative, unclassified
LOC_Os06g40280OsAffx.7527.1.S1_x_at2/116+23989809..23992668retrotransposon protein, putative, unclassified
LOC_Os06g40280Os.25754.2.S1_x_at1/116+23989809..23992668retrotransposon protein, putative, unclassified
LOC_Os06g40280Os.53479.1.S1_x_at1/116+23989809..23992668retrotransposon protein, putative, unclassified
LOC_Os06g40290OsAffx.15858.1.S1_at11/116+23993611..23994355hypothetical protein
LOC_Os06g40300NANA6+23994715..23995490transposon protein, putative, unclassified
LOC_Os06g40310OsAffx.22896.1.S1_x_at1/116+23996654..23998642transposon protein, putative, unclassified
LOC_Os06g40320OsAffx.28021.1.S1_at11/116+24000342..24002191hypothetical protein
LOC_Os06g40330OsAffx.28022.1.S1_x_at11/116+24004153..24008358expressed protein
LOC_Os06g40330Os.22469.1.S1_at11/116+24004153..24008358expressed protein
LOC_Os06g40339NANA6+24013475..24013789NA
LOC_Os06g40348NANA6+24015153..24015455NA
LOC_Os06g40360Os.12403.1.S1_a_at11/116+24032808..24035795Leucine Rich Repeat family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0045449biological_processregulation of transcription
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.22469.1.S1_at--646--3631Chr06:24004438..24004462 (25 bp)
CTTGCATAGAGTTTGTGCGTGTTAT
LOC_Os06g40330
Os.22469.1.S1_at--675--51Chr06:24004415..24004439 (25 bp)
ATTGATTTTGATCTCAACCAGTGAG
LOC_Os06g40330
Os.22469.1.S1_at--884--5351Chr06:24004382..24004406 (25 bp)
GAAGATCCTTTTTGCAATAACCATG
LOC_Os06g40330
Os.22469.1.S1_at--523--351Chr06:24004366..24004390 (25 bp)
ATAACCATGCCTTTCAAGATCGTCC
LOC_Os06g40330
Os.22469.1.S1_at--947--351Chr06:24004340..24004364 (25 bp)
ATAAGTTTGTGGCTGCGTATGCTAT
LOC_Os06g40330
Os.22469.1.S1_at--723--631Chr06:24004322..24004346 (25 bp)
ATGCTATTACTATCTTACCGTGGAG
LOC_Os06g40330
Os.22469.1.S1_at--520--9971Chr06:24004307..24004331 (25 bp)
TACCGTGGAGTTGTGTGCTATATGC
LOC_Os06g40330
Os.22469.1.S1_at--1077--10151Chr06:24004289..24004313 (25 bp)
TATATGCTTTGCTCCCCGAGGAAAT
LOC_Os06g40330
Os.22469.1.S1_at--889--4171Chr06:24004260..24004284 (25 bp)
CCCTTGAACTGAATGTTGCCATTGT
LOC_Os06g40330
Os.22469.1.S1_at--43--6691Chr06:24004246..24004270 (25 bp)
GTTGCCATTGTTTGTGTCGGCTACT
LOC_Os06g40330
Os.22469.1.S1_at--974--7451Chr06:24004233..24004257 (25 bp)
GTGTCGGCTACTTATTCGATTCATT
LOC_Os06g40330
Target Sequence 
CTTGCATAGAGTTTGTGCGTGTTATTGATTTTGATCTCAACCAGTGAGAGAACCAAGAAGATCCTTTTTGCAATAACCAT
GCCTTTCAAGATCGTCCAATAAGTTTGTGGCTGCGTATGCTATTACTATCTTACCGTGGAGTTGTGTGCTATATGCTTTG
CTCCCCGAGGAAATGTGNCCCTTGAACTGAATGTTGCCATTGTTTGTGTCGGCTACTTATTCGATTCATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.22469.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis