Browse Element(s) Details


OsAffx.28021.1.S1_at

Description tigr:9634.m03868
TID=OsAffx.28021.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4032011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g40240OsAffx.20387.1.S1_x_at2/116+23967212..23975390retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g40240OsAffx.1216.1.S1_at1/116+23967212..23975390retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g40250OsAffx.27819.1.S1_x_at4/116+23976459..23979013retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g40250OsAffx.27819.1.S1_at4/116+23976459..23979013retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g40250Os.47371.1.S1_at1/116+23976459..23979013retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g40250Os.45173.1.S1_x_at1/116+23976459..23979013retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g40260OsAffx.31869.5.S1_x_at1/116+23979278..23983699retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g40270Os.45173.1.S1_x_at1/116+23984808..23989178retrotransposon protein, putative, unclassified
LOC_Os06g40280OsAffx.7527.1.S1_x_at2/116+23989809..23992668retrotransposon protein, putative, unclassified
LOC_Os06g40280Os.25754.2.S1_x_at1/116+23989809..23992668retrotransposon protein, putative, unclassified
LOC_Os06g40280Os.53479.1.S1_x_at1/116+23989809..23992668retrotransposon protein, putative, unclassified
LOC_Os06g40290OsAffx.15858.1.S1_at11/116+23993611..23994355hypothetical protein
LOC_Os06g40300NANA6+23994715..23995490transposon protein, putative, unclassified
LOC_Os06g40310OsAffx.22896.1.S1_x_at1/116+23996654..23998642transposon protein, putative, unclassified
LOC_Os06g40320OsAffx.28021.1.S1_at11/116+24000342..24002191hypothetical protein
LOC_Os06g40330OsAffx.28022.1.S1_x_at11/116+24004153..24008358expressed protein
LOC_Os06g40330Os.22469.1.S1_at11/116+24004153..24008358expressed protein
LOC_Os06g40339NANA6+24013475..24013789NA
LOC_Os06g40348NANA6+24015153..24015455NA

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28021.1.S1_at--192--4591Chr06:24001655..24001679 (25 bp)
GCGCAGCACGACATGGGCAAGCTAC
LOC_Os06g40320
OsAffx.28021.1.S1_at--840--791Chr06:24001667..24001691 (25 bp)
ATGGGCAAGCTACTCCGCATGTACG
LOC_Os06g40320
OsAffx.28021.1.S1_at--726--4471Chr06:24001707..24001731 (25 bp)
GCCTGGAGTCGCAGGCCATCGACAT
LOC_Os06g40320
OsAffx.28021.1.S1_at--42--3551Chr06:24001723..24001747 (25 bp)
CATCGACATGTACGCCGGCAGCAGG
LOC_Os06g40320
OsAffx.28021.1.S1_at--1151--3891Chr06:24001751..24001775 (25 bp)
CTGGTGGAGTACCACGTCATGGCGT
LOC_Os06g40320
OsAffx.28021.1.S1_at--823--6171Chr06:24001841..24001865 (25 bp)
GAGGAGGTTCTCATCGAGTGCATCA
LOC_Os06g40320
OsAffx.28021.1.S1_at--28--6731Chr06:24001847..24001871 (25 bp)
GTTCTCATCGAGTGCATCAACAGGG
LOC_Os06g40320
OsAffx.28021.1.S1_at--73--1691Chr06:24001952..24001976 (25 bp)
AGCCTGCCGGCGAACCCGACGGAGA
LOC_Os06g40320
OsAffx.28021.1.S1_at--561--10611Chr06:24001982..24002006 (25 bp)
TTCGTGGCCGGCATCCTGTACGCTG
LOC_Os06g40320
OsAffx.28021.1.S1_at--71--571Chr06:24001994..24002018 (25 bp)
ATCCTGTACGCTGCGCTGGAGATGA
LOC_Os06g40320
OsAffx.28021.1.S1_at--344--9951Chr06:24002000..24002024 (25 bp)
TACGCTGCGCTGGAGATGAGGAACT
LOC_Os06g40320
Target Sequence 
GCGCAGCACGACATGGGCAAGCTACTCCGCATGTACGCGCGGCTGCTCCGCCGCCTGGAGTCGCAGGCCATCGACATGTA
CGCCGGCAGCAGGAGGCTGGTGGAGTACCACGTCATGGCGTGGGGCGCCTACGAGGCGACCCGGCCCGCGCTCCTCGGCC
TCGGGTTCATGGCGGGGCCAGGGATCGAGGAGGTTCTCATCGAGTGCATCAACAGGGGCAACGCCGCCGTCGCCGCCGCC
GCCGCCGCCGGCGACGGCCAGCCGAGGCTGCTCGCCGCGTTCGGGATCAAGCCGGAGAGCCTGCCGGCGAACCCGACGGA
GAGGCGCTTCGTGGCCGGCATCCTGTACGCTGCGCTGGAGATGAGGAACT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28021.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis