Browse Element(s) Details

OsAffx.15858.1.S1_at

Description

tigr:9634.m03865
TID=OsAffx.15858.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os06g40290	11/11	hypothetical protein

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os06g40240	OsAffx.20387.1.S1_x_at	2/11	6	+	23967212..23975390	retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g40240	OsAffx.1216.1.S1_at	1/11	6	+	23967212..23975390	retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g40250	OsAffx.27819.1.S1_x_at	4/11	6	+	23976459..23979013	retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g40250	OsAffx.27819.1.S1_at	4/11	6	+	23976459..23979013	retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g40250	Os.47371.1.S1_at	1/11	6	+	23976459..23979013	retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g40250	Os.45173.1.S1_x_at	1/11	6	+	23976459..23979013	retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g40260	OsAffx.31869.5.S1_x_at	1/11	6	+	23979278..23983699	retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g40270	Os.45173.1.S1_x_at	1/11	6	+	23984808..23989178	retrotransposon protein, putative, unclassified
LOC_Os06g40280	OsAffx.7527.1.S1_x_at	2/11	6	+	23989809..23992668	retrotransposon protein, putative, unclassified
LOC_Os06g40280	Os.25754.2.S1_x_at	1/11	6	+	23989809..23992668	retrotransposon protein, putative, unclassified
LOC_Os06g40280	Os.53479.1.S1_x_at	1/11	6	+	23989809..23992668	retrotransposon protein, putative, unclassified
LOC_Os06g40290	OsAffx.15858.1.S1_at	11/11	6	+	23993611..23994355	hypothetical protein
LOC_Os06g40300	NA	NA	6	+	23994715..23995490	transposon protein, putative, unclassified
LOC_Os06g40310	OsAffx.22896.1.S1_x_at	1/11	6	+	23996654..23998642	transposon protein, putative, unclassified
LOC_Os06g40320	OsAffx.28021.1.S1_at	11/11	6	+	24000342..24002191	hypothetical protein
LOC_Os06g40330	OsAffx.28022.1.S1_x_at	11/11	6	+	24004153..24008358	expressed protein
LOC_Os06g40330	Os.22469.1.S1_at	11/11	6	+	24004153..24008358	expressed protein
LOC_Os06g40339	NA	NA	6	+	24013475..24013789	NA
LOC_Os06g40348	NA	NA	6	+	24015153..24015455	NA

Select all/Clear all

Gene Ontology Classification

GO id	Type	Name
NONE	NONE	NONE

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
OsAffx.15858.1.S1_at--230--531	1	Chr06:23993649..23993673 (25 bp)	GAAGGAGATCCAAGGACCAATGGGA	LOC_Os06g40290
OsAffx.15858.1.S1_at--812--93	1	Chr06:23993661..23993685 (25 bp)	AGGACCAATGGGATTGGCCACCATA	LOC_Os06g40290
OsAffx.15858.1.S1_at--1157--1	1	Chr06:23993673..23993697 (25 bp)	ATTGGCCACCATACTTGATCCTAAG	LOC_Os06g40290
OsAffx.15858.1.S1_at--986--431	1	Chr06:23993715..23993739 (25 bp)	CCTTGGGTTCATTGAGTCCATTACT	LOC_Os06g40290
OsAffx.15858.1.S1_at--1097--673	1	Chr06:23993721..23993745 (25 bp)	GTTCATTGAGTCCATTACTAGCCAA	LOC_Os06g40290
OsAffx.15858.1.S1_at--1132--13	1	Chr06:23993734..23993758 (25 bp)	ATTACTAGCCAATCAAGTGAGGAGT	LOC_Os06g40290
OsAffx.15858.1.S1_at--494--319	1	Chr06:23993747..23993771 (25 bp)	CAAGTGAGGAGTGTACAGACAAACT	LOC_Os06g40290
OsAffx.15858.1.S1_at--930--245	1	Chr06:23993785..23993809 (25 bp)	AACAATTTGTATGACCTCATGAAGG	LOC_Os06g40290
OsAffx.15858.1.S1_at--429--525	1	Chr06:23993842..23993866 (25 bp)	GAATCTTCAGCTCATTCACTTGCTA	LOC_Os06g40290
OsAffx.15858.1.S1_at--566--339	1	Chr06:23993849..23993872 (24 bp)	CAGCTCATTCACTTGCTAATTCAGA	LOC_Os06g40290
OsAffx.15858.1.S1_at--653--13	1	Chr06:23993855..23994303 (25 bp)	ATTCACTTGCTAATTCAGATGCTGA	LOC_Os06g40290

Target Sequence

GAAGGAGATCCAAGGACCAATGGGATTGGCCACCATACTTGATCCTAAGTTTAAAACAGACTACCTCCTTGGGTTCATTG
AGTCCATTACTAGCCAATCAAGTGAGGAGTGTACAGACAAACTTGAAGAGGTTAAAAACAATTTGTATGACCTCATGAAG
GAGTATGAAATGGAAGAGGATGAAGATAACACAGAATCTTCAGCTCATTCACTTGCTAATTCAGATGCTGA

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis