Browse Element(s) Details

OsAffx.27819.1.S1_at

Description

tigr:9634.m02510
TID=OsAffx.27819.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os06g25340	4/11	hypothetical protein
LOC_Os06g40250	4/11	retrotransposon protein, putative, Ty3-gypsy subclass

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os06g25300	OsAffx.19542.3.S1_x_at	3/11	6	+	14822524..14823993	retrotransposon protein, putative, Ty1-copia subclass
LOC_Os06g25310	NA	NA	6	+	14824560..14826044	retrotransposon protein, putative, Ty1-copia subclass
LOC_Os06g25320	OsAffx.27819.1.S1_x_at	1/11	6	+	14826596..14833294	retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g25330	OsAffx.19100.1.S1_at	10/11	6	+	14835230..14837287	expressed protein
LOC_Os06g25330	OsAffx.17914.1.S1_x_at	1/11	6	+	14835230..14837287	expressed protein
LOC_Os06g25340	OsAffx.27819.1.S1_at	4/11	6	+	14840928..14843972	hypothetical protein
LOC_Os06g25340	OsAffx.27819.1.S1_x_at	4/11	6	+	14840928..14843972	hypothetical protein
LOC_Os06g25350	Os.52447.1.S1_x_at	2/11	6	+	14849246..14852102	retrotransposon, putative, centromere-specific
LOC_Os06g25350	OsAffx.25367.1.S1_at	1/11	6	+	14849246..14852102	retrotransposon, putative, centromere-specific
LOC_Os06g25360	Os.17546.2.S1_x_at	1/11	6	+	14855086..14857472	retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g25360	Os.31497.2.S1_x_at	1/11	6	+	14855086..14857472	retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g25360	OsAffx.19614.1.A1_at	1/11	6	+	14855086..14857472	retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g25360	Os.47722.1.S1_at	1/11	6	+	14855086..14857472	retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g25370	NA	NA	6	+	14857883..14859919	retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g25380	NA	NA	6	+	14861706..14864341	hypothetical protein
LOC_Os06g25390	OsAffx.15606.1.S1_at	11/11	6	+	14865756..14865971	hypothetical protein

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Gene Ontology Classification

GO id	Type	Name
NONE	NONE	NONE

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
OsAffx.27819.1.S1_at--1055--479	1	Chr06:14843903..14843927 (25 bp)	GCTCGCGCCGCTGCGAGTAGCGTGG	LOC_Os06g25340
OsAffx.27819.1.S1_at--1120--933	1	Chr06:14843901..14843925 (25 bp)	TCGCGCCGCTGCGAGTAGCGTGGTG	LOC_Os06g25340
OsAffx.27819.1.S1_at--1132--415	1	Chr06:14843898..14843922 (25 bp)	CGCCGCTGCGAGTAGCGTGGTGGAG	LOC_Os06g25340
OsAffx.27819.1.S1_at--116--453	1	Chr06:14843897..14843921 (25 bp)	GCCGCTGCGAGTAGCGTGGTGGAGT	LOC_Os06g25340
OsAffx.27819.1.S1_at--563--751	1	NONE	GTGGAGTTCCACGAGATTCCGACGT	NONE
OsAffx.27819.1.S1_at--136--855	1	NONE	TGGAGTTCCACGAGATTCCGACGTT	NONE
OsAffx.27819.1.S1_at--798--791	1	NONE	GGAGTTCCACGAGATTCCGACGTTC	NONE
OsAffx.27819.1.S1_at--811--437	2	Chr06:23976912..23977015 (25 bp)	CCAAGGCCAGCAAGGTACAGTGGTA	LOC_Os06g40250
OsAffx.27819.1.S1_at--312--321	2	Chr06:23976913..23977016 (25 bp)	CAAGGCCAGCAAGGTACAGTGGTAC	LOC_Os06g40250
OsAffx.27819.1.S1_at--677--295	3	Chr08:14485652..14486008 (25 bp)	AAGGCCAGCAAGGTACAGTGGTACA	NONE
OsAffx.27819.1.S1_at--1113--87	4	Chr08:14485653..14486009 (25 bp)	AGGCCAGCAAGGTACAGTGGTACAC	NONE

Target Sequence

GCTCGCGCCGCTGCGAGTAGCGTGGTGGAGTTCCACGAGATTCCGACGTTCCCGGAGAGTCCGATTTTGCAGGAGAAGAA
TTTGAAGAGTTCCAAGGCCAGCAAGGTACAGTGGTACAC

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis