Browse Element(s) Details

OsAffx.19100.1.S1_at

Description

tigr:9634.m02509
TID=OsAffx.19100.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os06g25330	10/11	expressed protein

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os06g25300	OsAffx.19542.3.S1_x_at	3/11	6	+	14822524..14823993	retrotransposon protein, putative, Ty1-copia subclass
LOC_Os06g25310	NA	NA	6	+	14824560..14826044	retrotransposon protein, putative, Ty1-copia subclass
LOC_Os06g25320	OsAffx.27819.1.S1_x_at	1/11	6	+	14826596..14833294	retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g25330	OsAffx.19100.1.S1_at	10/11	6	+	14835230..14837287	expressed protein
LOC_Os06g25330	OsAffx.17914.1.S1_x_at	1/11	6	+	14835230..14837287	expressed protein
LOC_Os06g25340	OsAffx.27819.1.S1_at	4/11	6	+	14840928..14843972	hypothetical protein
LOC_Os06g25340	OsAffx.27819.1.S1_x_at	4/11	6	+	14840928..14843972	hypothetical protein
LOC_Os06g25350	Os.52447.1.S1_x_at	2/11	6	+	14849246..14852102	retrotransposon, putative, centromere-specific
LOC_Os06g25350	OsAffx.25367.1.S1_at	1/11	6	+	14849246..14852102	retrotransposon, putative, centromere-specific
LOC_Os06g25360	Os.17546.2.S1_x_at	1/11	6	+	14855086..14857472	retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g25360	Os.31497.2.S1_x_at	1/11	6	+	14855086..14857472	retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g25360	OsAffx.19614.1.A1_at	1/11	6	+	14855086..14857472	retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g25360	Os.47722.1.S1_at	1/11	6	+	14855086..14857472	retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g25370	NA	NA	6	+	14857883..14859919	retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g25380	NA	NA	6	+	14861706..14864341	hypothetical protein

Select all/Clear all

Gene Ontology Classification

GO id	Type	Name
NONE	NONE	NONE

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
OsAffx.19100.1.S1_at--387--169	1	NONE	ACCAATCAAAGTGGCGGCGTCGTGG	NONE
OsAffx.19100.1.S1_at--892--719	2	Chr06:14836958..14836982 (25 bp)	GTCGTGGCCAGCCATGAAGACAAAA	LOC_Os06g25330
OsAffx.19100.1.S1_at--908--325	1	Chr06:14836973..14836997 (25 bp)	GAAGACAAAAACACCAGTTGGCGTC	LOC_Os06g25330
OsAffx.19100.1.S1_at--1038--627	4	Chr12:8997699..8998185 (25 bp)	GATGTAGACGCCCAGCAACGGCGAC	NONE
OsAffx.19100.1.S1_at--580--339	2	Chr06:14837033..14837057 (25 bp)	CAGCAACGGCGACCTAATAGGCCAA	LOC_Os06g25330
OsAffx.19100.1.S1_at--954--837	2	Chr06:14837040..14837064 (25 bp)	GGCGACCTAATAGGCCAACCATGCA	LOC_Os06g25330
OsAffx.19100.1.S1_at--517--1003	1	Chr06:14837115..14837139 (25 bp)	TAGACGCCCAGCAACAGCGCATAAT	LOC_Os06g25330
OsAffx.19100.1.S1_at--406--165	1	Chr06:14837130..14837154 (25 bp)	AGCGCATAATAGACCAGCTGTGCAG	LOC_Os06g25330
OsAffx.19100.1.S1_at--196--311	1	Chr06:14837137..14837161 (25 bp)	AATAGACCAGCTGTGCAGGCGAGGA	LOC_Os06g25330
OsAffx.19100.1.S1_at--139--277	3	Chr12:22235717..22235920 (25 bp)	AAGACGTGGACGTCCAACAACGGTG	NONE
OsAffx.19100.1.S1_at--281--773	2	Chr06:14837219..14837243 (25 bp)	GGTGGCACAATAAGCCAGCCGTGTA	LOC_Os06g25330

Target Sequence

ACCAATCAAAGTGGCGGCGTCGTGGCCAGCCATGAAGACAAAAACACCAGTTGGCGTCATACGAGGCAGCCGGTCGGTGA
AGATGTAGACGCCCAGCAACGGCGACCTAATAGGCCAACCATGCAGGCGAGGACACCAGTCGGTAGCGACGAAGGCGAGC
CGGTCGGTGAAGACATAGACGCCCAGCAACAGCGCATAATAGACCAGCTGTGCAGGCGAGGACACCAGTCGGTGGCGACG
AAGGCGAGCCGGTCGGTGAAGACGTGGACGTCCAACAACGGTGGCACAATAAGCCAGCCGTGTA

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis