Browse Element(s) Details


Os.15665.1.S1_at

Description gb:AK070164.1
DB_XREF= gi:32980188
TID=Os.15665.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.15665 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023043E07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023043E07, full insert sequence.
FL= gb:AK070164.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4827011/11Helicase conserved C-terminal domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g48229Os.26706.1.S1_at10/117+28807843..28818077Vacuolar sorting receptor 1 precursor, putative, expressed
LOC_Os07g48250OsAffx.16762.1.S1_at10/117+28822176..28823381hypothetical protein
LOC_Os07g48260Os.11321.1.S1_at11/117+28827100..28830705WRKY DNA binding domain containing protein, expressed
LOC_Os07g48270Os.15665.1.S1_at11/117+28830923..28833032Helicase conserved C-terminal domain containing protein, expressed
LOC_Os07g48280Os.15284.1.S1_at11/117+28847181..28850637expressed protein
LOC_Os07g48290Os.11068.3.S1_at9/117+28854206..28857841Serine/threonine-protein kinase AtPK19, putative, expressed
LOC_Os07g48300OsAffx.28951.1.S1_at11/117+28857334..28861514Eukaryotic translation initiation factor 2 beta subunit, putative, expressed
LOC_Os07g48300Os.17977.1.S1_s_at10/117+28857334..28861514Eukaryotic translation initiation factor 2 beta subunit, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006281biological_processDNA repair
GO:0003677molecular_functionDNA binding
GO:0004386molecular_functionhelicase activity
GO:0005515molecular_functionprotein binding
GO:0005524molecular_functionATP binding
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.15665.1.S1_at--121--211Chr07:28831466..28831490 (25 bp)
ATTTCCTGTGGCAACACTTGATCAG
LOC_Os07g48270
Os.15665.1.S1_at--517--6431Chr07:28831447..28831471 (25 bp)
GATCAGCCTTCAGAACAGGAGAATA
LOC_Os07g48270
Os.15665.1.S1_at--560--7591Chr07:28831402..28831426 (25 bp)
GGGCATATGAGAAGTTTACCTCCAT
LOC_Os07g48270
Os.15665.1.S1_at--186--8071Chr07:28831340..28831364 (25 bp)
GGAGCAACATGACAACCAGCATTAA
LOC_Os07g48270
Os.15665.1.S1_at--400--1211Chr07:28831316..28831340 (25 bp)
AGTTATCAGCTGACTTATTCTTTCA
LOC_Os07g48270
Os.15665.1.S1_at--1031--10171Chr07:28831301..28831325 (25 bp)
TATTCTTTCAACTGGAACTCGGAGA
LOC_Os07g48270
Os.15665.1.S1_at--215--331Chr07:28831168..28831192 (25 bp)
ATACTATGGTCTGGAGCTTCTCGGA
LOC_Os07g48270
Os.15665.1.S1_at--801--8071Chr07:28831156..28831180 (25 bp)
GGAGCTTCTCGGATCATTATATTAG
LOC_Os07g48270
Os.15665.1.S1_at--1006--4191Chr07:28831097..28831121 (25 bp)
CCCGAGCATCGGGTATGTACTTAAG
LOC_Os07g48270
Os.15665.1.S1_at--597--10451Chr07:28831049..28831073 (25 bp)
TTAGCCTGACAGAAGCATGTGTATC
LOC_Os07g48270
Os.15665.1.S1_at--208--431Chr07:28831027..28831051 (25 bp)
ATCATTGTATAAAACCCGCCGTCTT
LOC_Os07g48270
Target Sequence 
ATTTCCTGTGGCAACACTTGATCAGCCTTCAGAACAGGAGAATAAGAATTACGGTGGGGCNGGTGGGCATATGAGAAGTT
TACCTCCATNTGNTGCAGCTGGCTTAGCTGCTGAAAGGAGGTTATTGGAGCAACATGACAACCAGCATTAAGTTATCAGC
TGACTTATTCTTTCAACTGGAACTCGGAGAGGCAATGAAAGAGGTTGAAATAATTGATGCTGTAGATATTTTAGTTAATT
GGATTTATCGATTGCCTTNTTAGTTNTAAATTATGTTAAAATTACAGAAGGTAGGGATATACTATGGTCTGGAGCTTCTC
GGATCATTATATTAGAATCTGGCATCAGTGATAGAATGTTTAGGACACCCCCGAGCATCGGGTATGTACTTAAGGAGATG
TTGTGAAATTTAGTTAGTTAGCCTGACAGAAGCATGTGTATCATTGTATAAAACCCGCCGTCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.15665.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis