Browse Element(s) Details


Os.15687.2.A1_at

Description gb:AK068947.1
DB_XREF= gi:32978971
TID=Os.15687.2
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.15687 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023001A13, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023001A13, full insert sequence.
FL= gb:AK068947.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1266011/11protein kinase family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g12600OsAffx.12008.1.S1_x_at11/112+6582328..6587404NOL1/NOP2/sun family protein, expressed
LOC_Os02g12600Os.18147.1.S1_at10/112+6582328..6587404NOL1/NOP2/sun family protein, expressed
LOC_Os02g12610OsAffx.24212.1.S1_at11/112+6587538..6588065Hsp20/alpha crystallin family protein
LOC_Os02g12610OsAffx.24212.1.S1_x_at11/112+6587538..6588065Hsp20/alpha crystallin family protein
LOC_Os02g12620NANA2+6588391..6590160retrotransposon protein, putative, unclassified
LOC_Os02g12630OsAffx.10901.1.S1_at3/112+6591946..6594769retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g12640OsAffx.24213.1.S1_at11/112+6595265..6595657hypothetical protein
LOC_Os02g12650Os.11236.1.S1_at11/112+6599222..6606524Peptidase family M1 containing protein, expressed
LOC_Os02g12660Os.15687.2.A1_at11/112+6609459..6613879protein kinase family protein, putative, expressed
LOC_Os02g12660OsAffx.15330.1.S1_x_at1/112+6609459..6613879protein kinase family protein, putative, expressed
LOC_Os02g12670Os.11356.1.A1_at10/112+6616308..6623367protein kinase family protein, putative, expressed
LOC_Os02g12680Os.18933.1.S1_at5/112+6628383..6630103Cytochrome P450 74A3, putative, expressed
LOC_Os02g12690Os.7087.1.S1_at11/112+6637973..6639831Cytochrome P450 74A4, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.15687.2.A1_at--290--3951Chr02:6609925..6609949 (25 bp)
CGGACCTCGGGAAGGAGATCTTGCC
LOC_Os02g12660
Os.15687.2.A1_at--1107--1891Chr02:6609793..6609817 (25 bp)
ACGTCTCCACGCCATGATCAGAGTC
LOC_Os02g12660
Os.15687.2.A1_at--271--4271Chr02:6609737..6609761 (25 bp)
CCTGCAGCTGCAATGTATAGATGAT
LOC_Os02g12660
Os.15687.2.A1_at--184--731Chr02:6609717..6609741 (25 bp)
ATGATTAAAAGGCACTGCTGCTGCT
LOC_Os02g12660
Os.15687.2.A1_at--543--10631Chr02:6609689..6609713 (25 bp)
TTCGCTCTGTGTGGACTGCAGCTGA
LOC_Os02g12660
Os.15687.2.A1_at--714--3391Chr02:6609671..6609695 (25 bp)
CAGCTGAGCTGATGATGTTACTTAA
LOC_Os02g12660
Os.15687.2.A1_at--178--2951Chr02:6609648..6609672 (25 bp)
AATGGCGCAACATAGTTTGGGTGAT
LOC_Os02g12660
Os.15687.2.A1_at--88--8731Chr02:6609546..6609570 (25 bp)
TGTAATGTGACATGCCCAAGATGCC
LOC_Os02g12660
Os.15687.2.A1_at--1027--7891Chr02:6609499..6609523 (25 bp)
GGTTCTCAGATCATGTTTTGCGCAT
LOC_Os02g12660
Os.15687.2.A1_at--968--3511Chr02:6609488..6609512 (25 bp)
CATGTTTTGCGCATCTTTGTCATCG
LOC_Os02g12660
Os.15687.2.A1_at--415--3691Chr02:6609474..6609498 (25 bp)
CTTTGTCATCGCCAGAGAAAACTTT
LOC_Os02g12660
Target Sequence 
CGGACCTCGGGAAGGAGATCTTGCCGGAGCTCAACCGGNTGCGCTGCCTCAGCCAGGAGTACGACGCCTCCAAGGTCAGC
AGCACCAGCACCACCTGCTCCAGCTCCGCTCCCTACAGCTTNGGCGGCGACGACGTCTCCACGCCATGATCAGAGTCTNT
GCTGCCTCCATCCTCCATGGCTGCTGCACCTGCAGCTGCAATGTATAGATGATTAAAAGGCACTGCTGCTGCTGCCTTCG
CTCTGTGTGGACTGCAGCTGAGCTGATGATGTTACTTAATGGCGCAACATAGTTTGGGTGATTAATCATTAGCATGTAGA
TGATTAAGAGGAGAAAATTAAACCATGTAAAGGAAAGATTAAGGCAATGCATTTCTGTATGTAATGTGACATGCCCAAGA
TGCCAANTGGGTGATGAGCAGCCTTTGGTTCTCAGATCATGTTTTGCGCATCTTTGTCATCGCCAGAGAAAACTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.15687.2.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis