Browse Element(s) Details


Os.15690.1.S1_at

Description gb:AK065022.1
DB_XREF= gi:32975040
TID=Os.15690.1
CNT=10
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.15690 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013001G04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013001G04, full insert sequence.
FL= gb:AK119658.1 gb:AK065022.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0736010/11pentatricopeptide, putative, expressed
LOC_Os09g211001/11Mov34/MPN/PAD-1 family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g07330Os.54543.1.S1_at11/112+3772296..3776104expressed protein
LOC_Os02g07330Os.27381.1.S1_at1/112+3772296..3776104expressed protein
LOC_Os02g07340Os.27381.1.S1_at11/112+3778087..3791873HEAT repeat family protein, expressed
LOC_Os02g07350Os.5934.1.S1_at11/112+3792678..3796759Inositol monophosphatase family protein, expressed
LOC_Os02g07360Os.15690.1.S1_at10/112+3797704..3800985pentatricopeptide, putative, expressed
LOC_Os02g07370Os.49936.2.A1_at3/112+3803012..3806536retrotransposon protein, putative, unclassified
LOC_Os02g07370Os.52238.1.S1_at2/112+3803012..3806536retrotransposon protein, putative, unclassified
LOC_Os02g07370Os.33601.3.S1_x_at1/112+3803012..3806536retrotransposon protein, putative, unclassified
LOC_Os02g07370OsAffx.15708.1.S1_at1/112+3803012..3806536retrotransposon protein, putative, unclassified
LOC_Os02g07380NANA2+3811254..3817625retrotransposon protein, putative, unclassified
LOC_Os02g07390NANA2+3820396..3820992hypothetical protein
LOC_Os02g07400NANA2+3821687..3824174retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0006511biological_processubiquitin-dependent protein catabolism
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.15690.1.S1_at--290--1031Chr02:3800676..3800700 (25 bp)
AGGTCACCGCCATCGTCAGGTCCAT
LOC_Os02g07360
Os.15690.1.S1_at--231--7111Chr02:3800690..3800714 (25 bp)
GTCAGGTCCATGCACAAGAAGCCCA
LOC_Os02g07360
Os.15690.1.S1_at--819--2731Chr02:3800705..3800729 (25 bp)
AAGAAGCCCAAGACACTCTTCACCA
LOC_Os02g07360
Os.15690.1.S1_at--498--5631Chr02:3800716..3800740 (25 bp)
GACACTCTTCACCATATAATAATAA
LOC_Os02g07360
Os.15690.1.S1_at--986--7011Chr02:3800807..3800831 (25 bp)
GTACATTACAATACTACCTTAGTTT
LOC_Os02g07360
Os.15690.1.S1_at--447--3671Chr02:3800824..3800848 (25 bp)
CTTAGTTTTCTTTTAATGTATGCCG
LOC_Os02g07360
Os.15690.1.S1_at--866--731Chr02:3800839..3800863 (25 bp)
ATGTATGCCGCCATTAATTCTAAAG
LOC_Os02g07360
Os.15690.1.S1_at--544--10451Chr02:3800852..3800876 (25 bp)
TTAATTCTAAAGTAGCGGCTAACCA
LOC_Os02g07360
Os.15690.1.S1_at--103--7052Chr09:12722658..12722971 (25 bp)
GTAAATATGCTACTATCTCTGTTTT
LOC_Os09g21100
Os.15690.1.S1_at--821--6831NONE
TGTTTTTTAATATGACTAACCAACG
NONE
Os.15690.1.S1_at--566--9795Chr03:28987583..28987602 (20 bp)
TAACCAACGTCATATATTTAGGGAT
NONE
Target Sequence 
AGGTCACCGCCATCGTCAGGTCCATGCACAAGAAGCCCAAGACACTCTTCACCATATAATAATAAAAAAAAACCCAACNA
CTTTGCATATATAATTGCATTATTATTACATGTATAATAATACAGTATAAATGTACATTACAATACTACCTTAGTTTTCT
TTTAATGTATGCCGCCATTAATTCTAAAGTAGCGGCTAACCATTCANNNNAANNNNNNNAAAAAANNATTGTAAATATGC
TACTATCTCTGTTTTTTAATATGACTAACCAACGTCATATATTTAGGGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.15690.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis