Browse Element(s) Details


Os.15711.1.S1_at

Description gb:AK065873.1
DB_XREF= gi:32975891
TID=Os.15711.1
CNT=17
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.15711 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013049N23, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013049N23, full insert sequence.
FL= gb:AK065873.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2831011/11bZIP transcription factor family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g28270NANA9+17166042..17167607hypothetical protein
LOC_Os09g28280Os.37075.1.S1_at11/119+17170659..171718062-Hydroxyisoflavanone dehydratase, putative, expressed
LOC_Os09g28290OsAffx.6428.1.S1_at11/119+17174189..17174891hypothetical protein
LOC_Os09g28300Os.21902.1.S1_at11/119+17181866..17187377Remorin, C-terminal region family protein, expressed
LOC_Os09g28310Os.15711.1.S1_at11/119+17188975..17193011bZIP transcription factor family protein, expressed
LOC_Os09g28320OsAffx.30064.1.S1_at11/119+17195184..17196285hypothetical protein
LOC_Os09g28330Os.35344.18.S1_x_at8/119+17197069..17201792transposon protein, putative, Mutator sub-class
LOC_Os09g28330Os.35344.3.S1_x_at8/119+17197069..17201792transposon protein, putative, Mutator sub-class
LOC_Os09g28330OsAffx.22940.5.S1_x_at5/119+17197069..17201792transposon protein, putative, Mutator sub-class
LOC_Os09g28330OsAffx.22940.5.S1_at5/119+17197069..17201792transposon protein, putative, Mutator sub-class
LOC_Os09g28340Os.6007.1.S1_at11/119+17206463..17208026expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0006950biological_processresponse to stress
GO:0009737biological_processresponse to abscisic acid stimulus
GO:0009738biological_processabscisic acid mediated signaling
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
GO:0016563molecular_functiontranscriptional activator activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.15711.1.S1_at--356--7791Chr09:17192480..17192504 (25 bp)
GGTCGATGGCATGCAAATTCCCACC
LOC_Os09g28310
Os.15711.1.S1_at--100--1751Chr09:17192502..17192526 (25 bp)
ACCTTCATCAGCGACTGTGCATAAT
LOC_Os09g28310
Os.15711.1.S1_at--650--9591Chr09:17192582..17192606 (25 bp)
TCATTTTTCCTGCTAGCTGATTCTG
LOC_Os09g28310
Os.15711.1.S1_at--919--5291Chr09:17192608..17192632 (25 bp)
GAAGGCTTCCAAAACTGACATGTAG
LOC_Os09g28310
Os.15711.1.S1_at--468--1431Chr09:17192659..17192683 (25 bp)
AGAACAACTTCCTGTAATCCTTGAG
LOC_Os09g28310
Os.15711.1.S1_at--1147--7851Chr09:17192706..17192730 (25 bp)
GGTTTGTATCATGCTAGTCTTTCTA
LOC_Os09g28310
Os.15711.1.S1_at--145--10071Chr09:17192720..17192744 (25 bp)
TAGTCTTTCTATCTAGTGTCCCACC
LOC_Os09g28310
Os.15711.1.S1_at--323--1471Chr09:17192804..17192828 (25 bp)
AGAATCATACTGCAACCTGCCTGAT
LOC_Os09g28310
Os.15711.1.S1_at--1047--1751Chr09:17192818..17192842 (25 bp)
ACCTGCCTGATGACTAGCTAAGCTA
LOC_Os09g28310
Os.15711.1.S1_at--346--251Chr09:17192864..17192888 (25 bp)
ATATCTGTACCTGCTTCCTGAAGTA
LOC_Os09g28310
Os.15711.1.S1_at--783--6891Chr09:17192938..17192962 (25 bp)
GTATAAGCAGACCTAGTTCTCAAGA
LOC_Os09g28310
Target Sequence 
GGTCGATGGCATGCAAATTCCCACCTTCATCAGCGACTGTGCATAATTTAATCTGTTGTAAACCAATGGTGGACGAACTT
GTGCTTGATTAATCTTCTAGTTTCATTTTTCCTGCTAGCTGATTCTGAGAAGGCTTCCAAAACTGACATGTAGATTATGT
GTAGACGAATGAAGCTGTCAGAACAACTTCCTGTAATCCTTGAGAAAACTTGTATAGTGTTGTCTAGGTTTGTATCATGC
TAGTCTTTCTATCTAGTGTCCCACCCTAGAGACCAGACATCTTGGATGAGTTCAGAGGTCGATTTAAGCAAGTCATGGGG
ACCAAGAATCATACTGCAACCTGCCTGATGACTAGCTAAGCTAGGTAGTATGTAGCAATATCTGATATCTGTACCTGCTT
CCTGAAGTATGTATTGTTATCTAGTGTATCTGATATCTAGCGTGTAAACTGTAAAGGAGTATAAGCAGACCTAGTTCTCA
AGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.15711.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis