Browse Element(s) Details


Os.15760.2.S1_at

Description gb:AK073506.1
DB_XREF= gi:32983529
TID=Os.15760.2
CNT=7
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.15760 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-174-G05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033044K21, full insert sequence.
FL= gb:AK073506.1 gb:AK104070.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g4417010/11pentatricopeptide, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g44130Os.53455.1.S1_at11/1112+27341184..27343840expressed protein
LOC_Os12g44140Os.7063.1.S1_at11/1112+27345228..27348862expressed protein
LOC_Os12g44150Os.25634.1.S1_at11/1112+27353613..27360162Plasma membrane ATPase 1, putative, expressed
LOC_Os12g44160OsAffx.32184.1.S1_at11/1112+27360807..27364795HI0933-like protein, expressed
LOC_Os12g44160Os.39543.1.A1_at2/1112+27360807..27364795HI0933-like protein, expressed
LOC_Os12g44170Os.15760.2.S1_at10/1112+27364979..27369511pentatricopeptide, putative, expressed
LOC_Os12g44174Os.15760.1.S1_at11/1112+27369225..27369816expressed protein
LOC_Os12g44180Os.14785.1.S1_at11/1112+27373774..27377633expressed protein
LOC_Os12g44190Os.50620.1.S1_at11/1112+27378707..27380715ATPase 3, putative, expressed
LOC_Os12g44190OsAffx.25760.1.S1_x_at1/1112+27378707..27380715ATPase 3, putative, expressed
LOC_Os12g44200NANA12+27384508..27388587retrotransposon protein, putative, unclassified
LOC_Os12g44210Os.56885.1.S1_at11/1112+27388895..27390394Cell Division Protein AAA ATPase family, putative, expressed
LOC_Os12g44210OsAffx.32185.1.S1_s_at11/1112+27388895..27390394Cell Division Protein AAA ATPase family, putative, expressed
LOC_Os12g44210OsAffx.32185.1.S1_x_at2/1112+27388895..27390394Cell Division Protein AAA ATPase family, putative, expressed
LOC_Os12g44210OsAffx.25760.1.S1_x_at1/1112+27388895..27390394Cell Division Protein AAA ATPase family, putative, expressed
LOC_Os12g44220OsAffx.32185.1.S1_x_at11/1112+27392907..27393875Cell Division Protein AAA ATPase family, putative
LOC_Os12g44220OsAffx.32185.1.S1_s_at11/1112+27392907..27393875Cell Division Protein AAA ATPase family, putative

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.15760.2.S1_at--673--3971Chr12:27365494..27365518 (25 bp)
CGGGTCTTCCTTGGTTAGACAGTCA
LOC_Os12g44170
Os.15760.2.S1_at--232--5411Chr12:27365464..27365488 (25 bp)
GAAGCTGCTACATCTCTTCGAATTC
LOC_Os12g44170
Os.15760.2.S1_at--164--8231Chr12:27365421..27365445 (25 bp)
GGCAATACTGGATGCTTCGTTGGAT
LOC_Os12g44170
Os.15760.2.S1_at--1097--7711Chr12:27365378..27365402 (25 bp)
GGTGGCTGCACAATCCTTATGTTGA
LOC_Os12g44170
Os.15760.2.S1_at--1030--8911Chr12:27365356..27365380 (25 bp)
TGAGCGCATGCATCTGCTCTAGAGA
LOC_Os12g44170
Os.15760.2.S1_at--865--6291Chr12:27365255..27365279 (25 bp)
GATGATCTGGTGCATCTGTCTAGAT
LOC_Os12g44170
Os.15760.2.S1_at--66--6651Chr12:27365215..27365239 (25 bp)
GTTGTAGTTCTCTTTGATTCCTTAT
LOC_Os12g44170
Os.15760.2.S1_at--69--6591Chr12:27365200..27365224 (25 bp)
GATTCCTTATGCTTTGAAACCTCTT
LOC_Os12g44170
Os.15760.2.S1_at--311--5231Chr12:27365101..27365125 (25 bp)
GAATCATTTCGTGTTCCAGCACGTC
LOC_Os12g44170
Os.15760.2.S1_at--12--4711NONE
GCTGTTCCAACCTTTTTTGGGAGCT
NONE
Os.15760.2.S1_at--586--10751Chr12:27365048..27365072 (25 bp)
TTGAATGACTCGTTAGCTGCTACTG
LOC_Os12g44170
Target Sequence 
CGGGTCTTCCTTGGTTAGACAGTCAGTTCAGAAGCTGCTACATCTCTTCGAATTCCCGTTCGTCACCACGCGAGGCAATA
CTGGATGCTTCGTTGGATGTGGGGAGCCACTGAATAGGTGGCTGCACAATCCTTATGTTGAGCGCATGCATCTGCTCTAG
AGACTCTAGTGACTAGTGAGGTTATTCCAGTCAGAAATAAGGGACTCATCTAAACAGGGTGCAGTTTTGGGGGAAGAATG
ATGATCTGGTGCATCTGTCTAGATTGGTCTGTAGTCTAAGTTGTAGTTCTCTTTGATTCCTTATGCTTTGAAACCTCTTA
TTTGTGATAACATTTAGAGATGGCATTGGTGCATTTTAAGTGAGATTATCCTGTNTTAATTGATAGCCAATTAGAATCAT
TTCGTGTTCCAGCACGTCCATTGCTGTTCCAACCTTTTTTGGGAGCTTGAATGACTCGTTAGCTGCTACTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.15760.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis