Browse Element(s) Details


Os.15783.1.S2_at

Description gb:AK121964.1
DB_XREF= gi:37991587
TID=Os.15783.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.15783 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) isolate 31085 receptor-like protein kinase-like protein mRNA, partial cds
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033108C14, full insert sequence.
FL= gb:AK063635.1 gb:AK121964.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5891011/11Protein kinase domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g58870Os.18157.1.S1_at11/114+34797521..34801722Exo70 exocyst complex subunit family protein, expressed
LOC_Os04g58880Os.6072.1.S1_at11/114+34802943..34809060exocyst subunit EXO70 family protein, putative, expressed
LOC_Os04g58890Os.48131.1.S1_s_at11/114+34812136..34813565expressed protein
LOC_Os04g58890OsAffx.14474.1.S1_at11/114+34812136..34813565expressed protein
LOC_Os04g58900Os.7083.1.S1_at11/114+34815800..34819282hydrolase, NUDIX family protein, expressed
LOC_Os04g58910Os.15783.1.S2_at11/114+34820857..34824722Protein kinase domain containing protein, expressed
LOC_Os04g58910Os.15783.1.S1_at11/114+34820857..34824722Protein kinase domain containing protein, expressed
LOC_Os04g58920Os.55614.1.S1_at11/114+34835503..34837093U-box domain containing protein, expressed
LOC_Os04g58929NANA4+34840636..34841335NA
LOC_Os04g58940OsAffx.26660.1.S1_at11/114+34844939..34845480expressed protein
LOC_Os04g58960Os.47374.1.S1_at11/114+34848235..34855464zinc finger protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0000074biological_processregulation of progression through cell cycle
GO:0007165biological_processsignal transduction
GO:0009556biological_processmicrosporogenesis
GO:0010234biological_processtapetal cell fate specification
GO:0005576cellular_componentextracellular region
GO:0016020cellular_componentmembrane
GO:0004672molecular_functionprotein kinase activity
GO:0004675molecular_functiontransmembrane receptor protein serine/threonine kinase activity
GO:0005515molecular_functionprotein binding
GO:0016301molecular_functionkinase activity
GO:0019199molecular_functiontransmembrane receptor protein kinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.15783.1.S2_at--819--8971Chr04:34821407..34821431 (25 bp)
TGAACGTGCTCGTCCCGATGGTAGA
LOC_Os04g58910
Os.15783.1.S2_at--1047--9871Chr04:34821348..34821372 (25 bp)
TACATGGGCATTGATCTGCACCAGC
LOC_Os04g58910
Os.15783.1.S2_at--1149--1711Chr04:34821329..34821353 (25 bp)
ACCAGCCGTTGCTCCAGATGGTGAA
LOC_Os04g58910
Os.15783.1.S2_at--1060--1311Chr04:34821274..34821298 (25 bp)
AGATGGAAGCATCCTGAGCCTTGAG
LOC_Os04g58910
Os.15783.1.S2_at--728--9171Chr04:34821220..34821244 (25 bp)
TGCCGGGTTTGCAGAATCGTTCACC
LOC_Os04g58910
Os.15783.1.S2_at--324--351Chr04:34821154..34821178 (25 bp)
ATAAGTACATGTCTCCTCTGGACCT
LOC_Os04g58910
Os.15783.1.S2_at--572--4271Chr04:34821127..34821151 (25 bp)
CCTGTTTCCCTATAGTGTTCTTGTA
LOC_Os04g58910
Os.15783.1.S2_at--542--7271Chr04:34821086..34821110 (25 bp)
GTCCATGTGCTTATGCTTCTGTAGA
LOC_Os04g58910
Os.15783.1.S2_at--303--4891Chr04:34821021..34821045 (25 bp)
GCTTTCCTATTATTCCAATCTTGAG
LOC_Os04g58910
Os.15783.1.S2_at--455--1211Chr04:34820991..34821015 (25 bp)
AGTTTCTGCCTTTTTCTAGTCATCG
LOC_Os04g58910
Os.15783.1.S2_at--212--151Chr04:34820862..34820886 (25 bp)
ATTAGTACCAATCCAGGCTTGCATT
LOC_Os04g58910
Target Sequence 
TGAACGTGCTCGTCCCGATGGTAGAGAAATGGAAGCCTGTGAACGACGAGACCGAGGACTACATGGGCATTGATCTGCAC
CAGCCGTTGCTCCAGATGGTGAAGGGCTGGCAGGACGCAGAGGCCAGCATGACAGATGGAAGCATCCTGAGCCTTGAGGA
CAGCAAGGGCAGCATCCCAGCTCGGCCTGCCGGGTTTGCAGAATCGTTCACCTCGGCTGATGNCCGGTGAAGCATCATAT
ATCTACAATACAAATAAGTACATGTCTCCTCTGGACCTCTCCTGTTTCCCTATAGTGTTCTTGTAGGTAAAAGAGTGCAT
TGTCCATGTGCTTATGCTTCTGTAGATAGACATCCATTTTTCTTTCTTTTCTTTTTTGGTAGGATTGCTTTCCTATTATT
CCAATCTTGAGACTGAAGTTTCTGCCTTTTTCTAGTCATCGGGGTCATATAATGCTTCTTTAGTTTACTGTACTTGAAAA
TTTTTGCAATGGCATCTGGTGGCATCAATGATCCATATCATGAGTCTTGTNCTGTTTAGGGAGCAATTAGTACCAATCCA
GGCTTGCATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.15783.1.S2_at     

Putative homologies in rice

Putative homologies in arabidopsis