Browse Element(s) Details


OsAffx.26660.1.S1_at

Description tigr:9632.m05761
TID=OsAffx.26660.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5894011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g58910Os.15783.1.S2_at11/114+34820857..34824722Protein kinase domain containing protein, expressed
LOC_Os04g58910Os.15783.1.S1_at11/114+34820857..34824722Protein kinase domain containing protein, expressed
LOC_Os04g58920Os.55614.1.S1_at11/114+34835503..34837093U-box domain containing protein, expressed
LOC_Os04g58929NANA4+34840636..34841335NA
LOC_Os04g58940OsAffx.26660.1.S1_at11/114+34844939..34845480expressed protein
LOC_Os04g58960Os.47374.1.S1_at11/114+34848235..34855464zinc finger protein, putative, expressed
LOC_Os04g58970Os.46109.1.S1_at9/114+34865251..34867191Uncharacterized ACR, YggU family COG1872 containing protein, expressed
LOC_Os04g58970Os.9147.1.S1_s_at1/114+34865251..34867191Uncharacterized ACR, YggU family COG1872 containing protein, expressed
LOC_Os04g58980Os.56777.1.S1_at11/114+34867711..34870227IMP dehydrogenase/GMP reductase domain containing protein, expressed
LOC_Os04g58990Os.52632.1.S1_at10/114+34870390..34872153Protein kinase domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26660.1.S1_at--113--51Chr04:34845128..34845152 (25 bp)
ATTCGTCGCAAGCTGCGTCGACGGT
LOC_Os04g58940
OsAffx.26660.1.S1_at--554--9351Chr04:34845123..34845147 (25 bp)
TCGCAAGCTGCGTCGACGGTGCAAG
LOC_Os04g58940
OsAffx.26660.1.S1_at--368--5171Chr04:34845121..34845145 (25 bp)
GCAAGCTGCGTCGACGGTGCAAGAA
LOC_Os04g58940
OsAffx.26660.1.S1_at--454--2691Chr04:34845119..34845143 (25 bp)
AAGCTGCGTCGACGGTGCAAGAACC
LOC_Os04g58940
OsAffx.26660.1.S1_at--690--4771Chr04:34845117..34845141 (25 bp)
GCTGCGTCGACGGTGCAAGAACCAT
LOC_Os04g58940
OsAffx.26660.1.S1_at--363--4651Chr04:34845114..34845138 (25 bp)
GCGTCGACGGTGCAAGAACCATGCA
LOC_Os04g58940
OsAffx.26660.1.S1_at--857--5751Chr04:34845109..34845133 (25 bp)
GACGGTGCAAGAACCATGCAGGCGA
LOC_Os04g58940
OsAffx.26660.1.S1_at--988--2731Chr04:34845101..34845125 (25 bp)
AAGAACCATGCAGGCGAGCTACATC
LOC_Os04g58940
OsAffx.26660.1.S1_at--836--4051Chr04:34845087..34845111 (25 bp)
CGAGCTACATCAACAGGACGCCTTC
LOC_Os04g58940
OsAffx.26660.1.S1_at--339--1571Chr04:34845085..34845109 (25 bp)
AGCTACATCAACAGGACGCCTTCCA
LOC_Os04g58940
OsAffx.26660.1.S1_at--850--891Chr04:34845031..34845055 (25 bp)
AGGCTCTTCGGCTACCTGCCGCGGG
LOC_Os04g58940
Target Sequence 
ATTCGTCGCAAGCTGCGTCGACGGTGCAAGAACCATGCAGGCGAGCTACATCAACAGGACGCCTTCCACGGCGCCGACGG
CGATGATGAGGTCGGGGAGGCTCTTCGGCTACCTGCCGCGGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26660.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis