Browse Element(s) Details


Os.46109.1.S1_at

Description gb:AK070132.1
DB_XREF= gi:32980156
TID=Os.46109.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.46109 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023044D05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023044D05, full insert sequence.
FL= gb:AK070132.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g589709/11Uncharacterized ACR, YggU family COG1872 containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g58929NANA4+34840636..34841335NA
LOC_Os04g58940OsAffx.26660.1.S1_at11/114+34844939..34845480expressed protein
LOC_Os04g58960Os.47374.1.S1_at11/114+34848235..34855464zinc finger protein, putative, expressed
LOC_Os04g58970Os.46109.1.S1_at9/114+34865251..34867191Uncharacterized ACR, YggU family COG1872 containing protein, expressed
LOC_Os04g58970Os.9147.1.S1_s_at1/114+34865251..34867191Uncharacterized ACR, YggU family COG1872 containing protein, expressed
LOC_Os04g58980Os.56777.1.S1_at11/114+34867711..34870227IMP dehydrogenase/GMP reductase domain containing protein, expressed
LOC_Os04g58990Os.52632.1.S1_at10/114+34870390..34872153Protein kinase domain containing protein, expressed
LOC_Os04g59000Os.17144.1.A1_at9/114+34872938..34879210protein kinase family protein, putative, expressed
LOC_Os04g59010Os.49725.1.S1_at6/114+34886434..34887682Kelch motif family protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46109.1.S1_at--373--5691NONE
GACTTCATCAGCTCCGTACTTGGAG
NONE
Os.46109.1.S1_at--168--9651NONE
TCAGCTCCGTACTTGGAGTTAAGAA
NONE
Os.46109.1.S1_at--504--10571Chr04:34865497..34865521 (25 bp)
TTCTATTGGTTCTGGCTCAAAATCG
LOC_Os04g58970
Os.46109.1.S1_at--1100--7891Chr04:34865490..34865514 (25 bp)
GGTTCTGGCTCAAAATCGAGGGAAA
LOC_Os04g58970
Os.46109.1.S1_at--915--10811Chr04:34865462..34865486 (25 bp)
TTGTGCTGGTGCAAGATGCGACTCT
LOC_Os04g58970
Os.46109.1.S1_at--702--9011Chr04:34865453..34865477 (25 bp)
TGCAAGATGCGACTCTCCAGGGTGT
LOC_Os04g58970
Os.46109.1.S1_at--140--2011Chr04:34865442..34865466 (25 bp)
ACTCTCCAGGGTGTCTTTGATGCTC
LOC_Os04g58970
Os.46109.1.S1_at--579--3471Chr04:34865436..34865460 (25 bp)
CAGGGTGTCTTTGATGCTCTGAAGA
LOC_Os04g58970
Os.46109.1.S1_at--1101--2931Chr04:34865412..34865436 (25 bp)
AAGGCTTGTGCTTCTGCATGATGTA
LOC_Os04g58970
Os.46109.1.S1_at--416--7331Chr04:34865405..34865429 (25 bp)
GTGCTTCTGCATGATGTATGTTAAA
LOC_Os04g58970
Os.46109.1.S1_at--633--2271Chr04:34865383..34865407 (25 bp)
AAATGTGCATATGTGAAAACTACTC
LOC_Os04g58970
Target Sequence 
GACTTCATCAGCTCCGTACTTGGAGTTAAGAAAAGAGAAGTTTCTATTGGTTCTGGCTCAAAATCGAGGGAAAAGGTTGT
GCTGGTGCAAGATGCGACTCTCCAGGGTGTCTTTGATGCTCTGAAGAAGGCTTGTGCTTCTGCATGATGTATGTTAAATG
TGCATATGTGAAAACTACTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46109.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis