Browse Element(s) Details


Os.52632.1.S1_at

Description gb:AK068427.1
DB_XREF= gi:32978445
TID=Os.52632.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52632 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013155F22, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013155F22, full insert sequence.
FL= gb:AK068427.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5899010/11Protein kinase domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g58940OsAffx.26660.1.S1_at11/114+34844939..34845480expressed protein
LOC_Os04g58960Os.47374.1.S1_at11/114+34848235..34855464zinc finger protein, putative, expressed
LOC_Os04g58970Os.46109.1.S1_at9/114+34865251..34867191Uncharacterized ACR, YggU family COG1872 containing protein, expressed
LOC_Os04g58970Os.9147.1.S1_s_at1/114+34865251..34867191Uncharacterized ACR, YggU family COG1872 containing protein, expressed
LOC_Os04g58980Os.56777.1.S1_at11/114+34867711..34870227IMP dehydrogenase/GMP reductase domain containing protein, expressed
LOC_Os04g58990Os.52632.1.S1_at10/114+34870390..34872153Protein kinase domain containing protein, expressed
LOC_Os04g59000Os.17144.1.A1_at9/114+34872938..34879210protein kinase family protein, putative, expressed
LOC_Os04g59010Os.49725.1.S1_at6/114+34886434..34887682Kelch motif family protein, expressed
LOC_Os04g59020Os.27945.1.A1_x_at11/114+34892400..34893173Integral membrane protein, expressed
LOC_Os04g59020OsAffx.26662.1.S1_x_at11/114+34892400..34893173Integral membrane protein, expressed
LOC_Os04g59020OsAffx.26662.1.S1_at11/114+34892400..34893173Integral membrane protein, expressed
LOC_Os04g59020Os.27945.1.A1_at9/114+34892400..34893173Integral membrane protein, expressed
LOC_Os04g59030OsAffx.28370.3.S1_at10/114+34895772..34897039hypothetical protein
LOC_Os04g59030OsAffx.28370.1.S1_at5/114+34895772..34897039hypothetical protein
LOC_Os04g59030OsAffx.28370.1.S1_x_at2/114+34895772..34897039hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52632.1.S1_at--470--5651Chr04:34871247..34871271 (25 bp)
GACAGCAATGCGATCCTCAAGATAT
LOC_Os04g58990
Os.52632.1.S1_at--623--10411Chr04:34871092..34871242 (25 bp)
TTTTGGCCTGTCAAGAGTTCTTCGT
LOC_Os04g58990
Os.52632.1.S1_at--622--6572Chr09:21641190..21641209 (20 bp)
GATTCTCTTCGAGCTCTTGAATGGC
NONE
Os.52632.1.S1_at--130--8311Chr04:34870854..34870878 (25 bp)
GGCTATCCACCATTCCGTGGTAGAA
LOC_Os04g58990
Os.52632.1.S1_at--1082--631Chr04:34870731..34870755 (25 bp)
ATGCATAAACCGAACCGTGTCTCTT
LOC_Os04g58990
Os.52632.1.S1_at--1146--7151Chr04:34870713..34870737 (25 bp)
GTCTCTTCCATTCTCAGAAGTCGTT
LOC_Os04g58990
Os.52632.1.S1_at--745--10291Chr04:34870687..34870711 (25 bp)
TTTCCAAGCTACGTCCTGATTCTAT
LOC_Os04g58990
Os.52632.1.S1_at--963--991Chr04:34870542..34870566 (25 bp)
AGGTTGTCCTTCCAAGAGTTCTTCA
LOC_Os04g58990
Os.52632.1.S1_at--5--5811Chr04:34870495..34870519 (25 bp)
GACGCCTTACTGAAGAGCCTATGCA
LOC_Os04g58990
Os.52632.1.S1_at--900--631Chr04:34870407..34870431 (25 bp)
ATGCAGGTACCTCTTTGTGTTCAAA
LOC_Os04g58990
Os.52632.1.S1_at--321--1731Chr04:34870382..34870406 (25 bp)
ACCTTGTTTTCCTGTAGTCTTCTCT
NONE
Target Sequence 
GACAGCAATGCGATCCTCAAGATATCTGATTTTGGCCTGTCAAGAGTTCTTCGTCCNGGGGAATACACAGATACAAATTG
TGNCACTTGTTTGTACATGGCCCCAGAAGTNATNCTGTTTCAGAAGTATGATGGTGGGGTAGATTTGTGGAGTATCGNCG
CGATTCTCTTCGAGCTCTTGAATGGCTATCCACCATTCCGTGGTAGAAGCNNTGTCCAGCTGCTTCAATGCATAAACCGA
ACCGTGTCTCTTCCATTCTCAGAAGTCGTTNTTTCCAAGCTACGTCCTGATTCTATTGATATATGCACCAGACTTCTGTG
TAGCAATCCAGTGAAAAGGTTGTCCTTCCAAGAGTTCTTCAGCCACAGCTTCCTCAGACCATAGACGCCTTACTGAAGAG
CCTATGCAAGCTTAGCAATATCATCTGAAGTTCAGGATTAGTTGAATTGTTTGTTTGTTGTACTTGGACATATGCAGGTA
CCTCTTTGTGTTCAAAACCTTGTTTTCCTGTAGTCTTCTCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52632.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis