Browse Element(s) Details

Os.27945.1.A1_at

Description

gb:CB965066
DB_XREF= gi:30227174
DB_XREF=NL15_H08
CLONE=NL15_H08
TID=Os.27945.1
CNT=3
FEA=EST
TIER=ConsEnd
STK=3
UG=Os.27945 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequences
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os04g59020	9/11	Integral membrane protein, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os04g58980	Os.56777.1.S1_at	11/11	4	+	34867711..34870227	IMP dehydrogenase/GMP reductase domain containing protein, expressed
LOC_Os04g58990	Os.52632.1.S1_at	10/11	4	+	34870390..34872153	Protein kinase domain containing protein, expressed
LOC_Os04g59000	Os.17144.1.A1_at	9/11	4	+	34872938..34879210	protein kinase family protein, putative, expressed
LOC_Os04g59010	Os.49725.1.S1_at	6/11	4	+	34886434..34887682	Kelch motif family protein, expressed
LOC_Os04g59020	Os.27945.1.A1_x_at	11/11	4	+	34892400..34893173	Integral membrane protein, expressed
LOC_Os04g59020	OsAffx.26662.1.S1_x_at	11/11	4	+	34892400..34893173	Integral membrane protein, expressed
LOC_Os04g59020	OsAffx.26662.1.S1_at	11/11	4	+	34892400..34893173	Integral membrane protein, expressed
LOC_Os04g59020	Os.27945.1.A1_at	9/11	4	+	34892400..34893173	Integral membrane protein, expressed
LOC_Os04g59030	OsAffx.28370.3.S1_at	10/11	4	+	34895772..34897039	hypothetical protein
LOC_Os04g59030	OsAffx.28370.1.S1_at	5/11	4	+	34895772..34897039	hypothetical protein
LOC_Os04g59030	OsAffx.28370.1.S1_x_at	2/11	4	+	34895772..34897039	hypothetical protein
LOC_Os04g59040	Os.9831.1.S1_at	10/11	4	+	34901612..34905046	Soluble inorganic pyrophosphatase, putative, expressed
LOC_Os04g59050	Os.51110.1.S1_at	11/11	4	+	34907912..34909325	expressed protein
LOC_Os04g59050	OsAffx.18607.1.S1_x_at	1/11	4	+	34907912..34909325	expressed protein
LOC_Os04g59060	Os.18273.1.S1_at	11/11	4	+	34909581..34913534	DnaJ domain containing protein, expressed
LOC_Os04g59060	OsAffx.30143.1.S1_at	1/11	4	+	34909581..34913534	DnaJ domain containing protein, expressed

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Gene Ontology Classification

GO id	Type	Name
NONE	NONE	NONE

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.27945.1.A1_at--66--963	1	Chr04:34893044..34893068 (25 bp)	TCATGAGGCTCTTCAAGGCCAGCGG	LOC_Os04g59020
Os.27945.1.A1_at--1104--351	1	Chr04:34893045..34893069 (25 bp)	CATGAGGCTCTTCAAGGCCAGCGGC	LOC_Os04g59020
Os.27945.1.A1_at--1140--69	1	Chr04:34893046..34893070 (25 bp)	ATGAGGCTCTTCAAGGCCAGCGGCA	LOC_Os04g59020
Os.27945.1.A1_at--155--889	2	Chr07:2374243..2374262 (20 bp)	TGAGGCTCTTCAAGGCCAGCGGCAT	NONE
Os.27945.1.A1_at--553--621	2	Chr07:2374243..2374263 (21 bp)	GAGGCTCTTCAAGGCCAGCGGCATA	NONE
Os.27945.1.A1_at--117--89	1	Chr04:34893059..34893083 (25 bp)	AGGCCAGCGGCATATGATCGATCGA	LOC_Os04g59020
Os.27945.1.A1_at--1086--843	1	Chr04:34893060..34893084 (25 bp)	GGCCAGCGGCATATGATCGATCGAT	LOC_Os04g59020
Os.27945.1.A1_at--562--909	1	Chr04:34893109..34893133 (25 bp)	TGCTCTACTACTAAGTTCATTTTTT	LOC_Os04g59020
Os.27945.1.A1_at--913--481	1	Chr04:34893110..34893134 (25 bp)	GCTCTACTACTAAGTTCATTTTTTT	LOC_Os04g59020

Target Sequence

TCATGAGGCTCTTCAAGGCCAGCGGCATATGATCGATCGATCACTAGCTAGTTAATTAAGCTCTNTGCTCTACTACTAAG
TTCATTTTTTT

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis