Browse Element(s) Details


OsAffx.28370.3.S1_at

Description tigr:9632.m05770
TID=OsAffx.28370.3
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5903010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g58990Os.52632.1.S1_at10/114+34870390..34872153Protein kinase domain containing protein, expressed
LOC_Os04g59000Os.17144.1.A1_at9/114+34872938..34879210protein kinase family protein, putative, expressed
LOC_Os04g59010Os.49725.1.S1_at6/114+34886434..34887682Kelch motif family protein, expressed
LOC_Os04g59020Os.27945.1.A1_x_at11/114+34892400..34893173Integral membrane protein, expressed
LOC_Os04g59020OsAffx.26662.1.S1_x_at11/114+34892400..34893173Integral membrane protein, expressed
LOC_Os04g59020OsAffx.26662.1.S1_at11/114+34892400..34893173Integral membrane protein, expressed
LOC_Os04g59020Os.27945.1.A1_at9/114+34892400..34893173Integral membrane protein, expressed
LOC_Os04g59030OsAffx.28370.3.S1_at10/114+34895772..34897039hypothetical protein
LOC_Os04g59030OsAffx.28370.1.S1_at5/114+34895772..34897039hypothetical protein
LOC_Os04g59030OsAffx.28370.1.S1_x_at2/114+34895772..34897039hypothetical protein
LOC_Os04g59040Os.9831.1.S1_at10/114+34901612..34905046Soluble inorganic pyrophosphatase, putative, expressed
LOC_Os04g59050Os.51110.1.S1_at11/114+34907912..34909325expressed protein
LOC_Os04g59050OsAffx.18607.1.S1_x_at1/114+34907912..34909325expressed protein
LOC_Os04g59060Os.18273.1.S1_at11/114+34909581..34913534DnaJ domain containing protein, expressed
LOC_Os04g59060OsAffx.30143.1.S1_at1/114+34909581..34913534DnaJ domain containing protein, expressed
LOC_Os04g59080OsAffx.22699.1.S1_x_at2/114+34919958..34925933retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28370.3.S1_at--904--2451Chr04:34896519..34896543 (25 bp)
AACAACGAGTTTGCTGCTGGCGTCG
LOC_Os04g59030
OsAffx.28370.3.S1_at--473--8431NONE
GGCCTGCTTCAACATCAGGGTGTTG
NONE
OsAffx.28370.3.S1_at--672--691Chr04:34896040..34896064 (25 bp)
ATGAGACGATCAGGAGGCTTGAGCA
LOC_Os04g59030
OsAffx.28370.3.S1_at--474--411Chr04:34896032..34896056 (25 bp)
ATCAGGAGGCTTGAGCAGCTGTTCA
LOC_Os04g59030
OsAffx.28370.3.S1_at--589--8911Chr04:34896021..34896045 (25 bp)
TGAGCAGCTGTTCAGGTTCACCCAA
LOC_Os04g59030
OsAffx.28370.3.S1_at--1147--8771Chr04:34896013..34896037 (25 bp)
TGTTCAGGTTCACCCAAGCAAACAA
LOC_Os04g59030
OsAffx.28370.3.S1_at--1067--7551Chr04:34895985..34896009 (25 bp)
GGGCCCTGCTGTGCTGCTGAGGATC
LOC_Os04g59030
OsAffx.28370.3.S1_at--255--3611Chr04:34895961..34895985 (25 bp)
CATTGGGAGGATCAACCGTGCAAAC
LOC_Os04g59030
OsAffx.28370.3.S1_at--938--7951Chr04:34895953..34895977 (25 bp)
GGATCAACCGTGCAAACGCCAGGAG
LOC_Os04g59030
OsAffx.28370.3.S1_at--824--2371Chr04:34895940..34895964 (25 bp)
AAACGCCAGGAGATCAACGCTCTTC
LOC_Os04g59030
OsAffx.28370.3.S1_at--70--8411Chr04:34895813..34895837 (25 bp)
GGCGCCGCCATCAACAACGGTAACA
LOC_Os04g59030
Target Sequence 
AACAACGAGTTTGCTGCTGGCGTCGCCTGCTTCAACGTCGCCGCCGCTACCGCCGCGGGAAGGACGACATCGACGCCGCT
GCCGCCGGGAAGGACGACATCGACGCCGCCGCCACCGGGAACGACGAGTTCGCTACCGCCGCCGCTTGCTTCAACGCCGC
TGTCGCTGGGAAGGACGAGTTCGATGCCGCCGCCGCGGCCTGCTTCAACATCAGGGTGTTGGATGAGACGATCAGGAGGC
TTGAGCAGCTGTTCAGGTTCACCCAAGCAAACAACCCGGGCCCTGCTGTGCTGCTGAGGATCATTGGGAGGATCAACCGT
GCAAACGCCAGGAGATCAACGCTCTTCGCCCAGCTCCACACCTACATTCGCCGCCGCCGCCGTCGCCACCACCAGCAACA
GGCGCCTCCGTCGCCACCTGCCGGCGGCAACATCGCCAGCAACGGCAACGGCGCCGCCATCAACAACGGTAACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28370.3.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis