Browse Element(s) Details


OsAffx.26662.1.S1_x_at

Description tigr:9632.m05769
TID=OsAffx.26662.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=66117-66707
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5902011/11Integral membrane protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g58980Os.56777.1.S1_at11/114+34867711..34870227IMP dehydrogenase/GMP reductase domain containing protein, expressed
LOC_Os04g58990Os.52632.1.S1_at10/114+34870390..34872153Protein kinase domain containing protein, expressed
LOC_Os04g59000Os.17144.1.A1_at9/114+34872938..34879210protein kinase family protein, putative, expressed
LOC_Os04g59010Os.49725.1.S1_at6/114+34886434..34887682Kelch motif family protein, expressed
LOC_Os04g59020Os.27945.1.A1_x_at11/114+34892400..34893173Integral membrane protein, expressed
LOC_Os04g59020OsAffx.26662.1.S1_x_at11/114+34892400..34893173Integral membrane protein, expressed
LOC_Os04g59020OsAffx.26662.1.S1_at11/114+34892400..34893173Integral membrane protein, expressed
LOC_Os04g59020Os.27945.1.A1_at9/114+34892400..34893173Integral membrane protein, expressed
LOC_Os04g59030OsAffx.28370.3.S1_at10/114+34895772..34897039hypothetical protein
LOC_Os04g59030OsAffx.28370.1.S1_at5/114+34895772..34897039hypothetical protein
LOC_Os04g59030OsAffx.28370.1.S1_x_at2/114+34895772..34897039hypothetical protein
LOC_Os04g59040Os.9831.1.S1_at10/114+34901612..34905046Soluble inorganic pyrophosphatase, putative, expressed
LOC_Os04g59050Os.51110.1.S1_at11/114+34907912..34909325expressed protein
LOC_Os04g59050OsAffx.18607.1.S1_x_at1/114+34907912..34909325expressed protein
LOC_Os04g59060Os.18273.1.S1_at11/114+34909581..34913534DnaJ domain containing protein, expressed
LOC_Os04g59060OsAffx.30143.1.S1_at1/114+34909581..34913534DnaJ domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26662.1.S1_x_at--156--2471Chr04:34892486..34892510 (25 bp)
AACAAGCTGCAGGTTGACGCCGAGA
LOC_Os04g59020
OsAffx.26662.1.S1_x_at--520--3791Chr04:34892492..34892516 (25 bp)
CTGCAGGTTGACGCCGAGAACCCGG
LOC_Os04g59020
OsAffx.26662.1.S1_x_at--512--891Chr04:34892643..34892667 (25 bp)
AGGCGCGCGCCATGGTCATCTCCGG
LOC_Os04g59020
OsAffx.26662.1.S1_x_at--635--1231Chr04:34892712..34892736 (25 bp)
AGTTCGTGTCCGTGTGCTCGCAGCG
LOC_Os04g59020
OsAffx.26662.1.S1_x_at--155--9431Chr04:34892715..34892739 (25 bp)
TCGTGTCCGTGTGCTCGCAGCGCGA
LOC_Os04g59020
OsAffx.26662.1.S1_x_at--879--5071Chr04:34892731..34892755 (25 bp)
GCAGCGCGATGTGGAGCTGGCGCAG
LOC_Os04g59020
OsAffx.26662.1.S1_x_at--1059--6171Chr04:34892786..34892810 (25 bp)
GAGGAGAAGGCCCTGCCGAGCCCCG
LOC_Os04g59020
OsAffx.26662.1.S1_x_at--730--10531Chr04:34892879..34892903 (25 bp)
TTCATCGTCAACTACAGGCTGCGGA
LOC_Os04g59020
OsAffx.26662.1.S1_x_at--875--9611Chr04:34892880..34892904 (25 bp)
TCATCGTCAACTACAGGCTGCGGAT
LOC_Os04g59020
OsAffx.26662.1.S1_x_at--215--9411Chr04:34892883..34892907 (25 bp)
TCGTCAACTACAGGCTGCGGATCGC
LOC_Os04g59020
OsAffx.26662.1.S1_x_at--402--6711Chr04:34892944..34892968 (25 bp)
GTTCGGGTGCGTGGGCGCGGTGCTG
LOC_Os04g59020
Target Sequence 
AACAAGCTGCAGGTTGACGCCGAGAACCCGGCGGCGGTGGGCGACGAGCTGGACCTGGCGGCGCGCGCCAACTGGCTGCG
GGCGGCGGTGCTGGGCGCGAACGACGGGCTGGTGTCGACGGCGTCGCTGATGCTGGGGGTGGGCGCCGTGAAGGCGGAGG
CGCGCGCCATGGTCATCTCCGGCTTCGCGGGCCTCCTGGCGGGCGCCTGCAGCATGGCCATCGGGGAGTTCGTGTCCGTG
TGCTCGCAGCGCGATGTGGAGCTGGCGCAGCTGGAGCGCGATGGCAAGCGCGGCGGGGAGGAGGAGAAGGCCCTGCCGAG
CCCCGCGCAGGCGGCGGCGGCGTCGGCCATGGCGTTCTCGGTGGGCGCCGTGGTGCCGCTGCTGGCGGCCGGGTTCATCG
TCAACTACAGGCTGCGGATCGCGGTGGTGGTGGCGGTGGCGAGCGTGGCGCTGGCGGCGTTCGGGTGCGTGGGCGCGGTG
CTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26662.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis