Browse Element(s) Details


Os.56777.1.S1_at

Description gb:AK110404.1
DB_XREF= gi:32995613
TID=Os.56777.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.56777 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-165-G03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-165-G03, full insert sequence.
FL= gb:AK110404.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5898011/11IMP dehydrogenase/GMP reductase domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g58940OsAffx.26660.1.S1_at11/114+34844939..34845480expressed protein
LOC_Os04g58960Os.47374.1.S1_at11/114+34848235..34855464zinc finger protein, putative, expressed
LOC_Os04g58970Os.46109.1.S1_at9/114+34865251..34867191Uncharacterized ACR, YggU family COG1872 containing protein, expressed
LOC_Os04g58970Os.9147.1.S1_s_at1/114+34865251..34867191Uncharacterized ACR, YggU family COG1872 containing protein, expressed
LOC_Os04g58980Os.56777.1.S1_at11/114+34867711..34870227IMP dehydrogenase/GMP reductase domain containing protein, expressed
LOC_Os04g58990Os.52632.1.S1_at10/114+34870390..34872153Protein kinase domain containing protein, expressed
LOC_Os04g59000Os.17144.1.A1_at9/114+34872938..34879210protein kinase family protein, putative, expressed
LOC_Os04g59010Os.49725.1.S1_at6/114+34886434..34887682Kelch motif family protein, expressed
LOC_Os04g59020Os.27945.1.A1_x_at11/114+34892400..34893173Integral membrane protein, expressed
LOC_Os04g59020OsAffx.26662.1.S1_x_at11/114+34892400..34893173Integral membrane protein, expressed
LOC_Os04g59020OsAffx.26662.1.S1_at11/114+34892400..34893173Integral membrane protein, expressed
LOC_Os04g59020Os.27945.1.A1_at9/114+34892400..34893173Integral membrane protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009793biological_processembryonic development (sensu Magnoliophyta)
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.56777.1.S1_at--218--2231Chr04:34868260..34868284 (25 bp)
ACAAGGAGGTGCACTTCTTCTACGG
LOC_Os04g58980
Os.56777.1.S1_at--569--1051Chr04:34867997..34868021 (25 bp)
AGGGTGTACAAGAACCTGCGGGTAT
LOC_Os04g58980
Os.56777.1.S1_at--452--8391Chr04:34867970..34867994 (25 bp)
GGCGACTGCCACGAGTTCTTGAAAG
LOC_Os04g58980
Os.56777.1.S1_at--1075--4391Chr04:34867904..34867928 (25 bp)
GCCAACAGGTTCCACAGGTTTCAGA
LOC_Os04g58980
Os.56777.1.S1_at--1117--1011Chr04:34867889..34867913 (25 bp)
AGGTTTCAGAATGGCGCCTGTTCTT
LOC_Os04g58980
Os.56777.1.S1_at--771--9571Chr04:34867868..34867892 (25 bp)
TCTTGCAGGGACTACTGGTGACCAT
LOC_Os04g58980
Os.56777.1.S1_at--89--9671Chr04:34867844..34867868 (25 bp)
TCACCATCTTTCTCTCAATTCAATT
LOC_Os04g58980
Os.56777.1.S1_at--949--9511Chr04:34867820..34867844 (25 bp)
TCTACTTGCATTACCGAATTCTGAA
LOC_Os04g58980
Os.56777.1.S1_at--461--5211Chr04:34867805..34867829 (25 bp)
GAATTCTGAATTGGAGCGACCGTGA
LOC_Os04g58980
Os.56777.1.S1_at--1137--7111Chr04:34867765..34867789 (25 bp)
GTCATGTACACAATCCCCAATTTAG
LOC_Os04g58980
Os.56777.1.S1_at--50--1111Chr04:34867738..34867762 (25 bp)
AGTGAGTAGCTCTTTGACGCGGAAG
LOC_Os04g58980
Target Sequence 
ACAAGGAGGTGCACTTCTTCTACGGCGGCGGCGACGACGCGCACCCGCAGGCCGGCGACATCCGGCGCGCCCTGCGGGAG
GTGGAGGCGAGGATGCGGGAGCGGCTGGGGTACAGCGGCGACGCGCGGTGCGCGCTGCACGACGTGGACGAGGAGTCGCG
GGTGGAGAGCCTGAGGGAACACAGCGAGAGGCTCGCCGTGGGGCTGTGGCTGCTGCGCGACGGCACCGGAGACGATGGCG
GCGGCGGCGGCGGCGAGGTGGTGAGGGTGTACAAGAACCTGCGGGTATGCGGCGACTGCCACGAGTTCTTGAAAGGGTTG
TCGGCGGTGGTGAGGAGGGTGGTGGTGGTGAGGGACGCCAACAGGTTCCACAGGTTTCAGAATGGCGCCTGTTCTTGCAG
GGACTACTGGTGACCATCACCATCTTTCTCTCAATTCAATTCTACTTGCATTACCGAATTCTGAATTGGAGCGACCGTGA
GAGGTAGCATAGAATGTCATGTACACAATCCCCAATTTAGAGAGTGAGTAGCTCTTTGACGCGGAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.56777.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis