Browse Element(s) Details


Os.9831.1.S1_at

Description gb:AK073929.1
DB_XREF= gi:32983952
TID=Os.9831.1
CNT=26
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.9831 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033073D22, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033073D22, full insert sequence.
FL= gb:AK061239.1 gb:AK073929.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5904010/11Soluble inorganic pyrophosphatase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g59000Os.17144.1.A1_at9/114+34872938..34879210protein kinase family protein, putative, expressed
LOC_Os04g59010Os.49725.1.S1_at6/114+34886434..34887682Kelch motif family protein, expressed
LOC_Os04g59020Os.27945.1.A1_x_at11/114+34892400..34893173Integral membrane protein, expressed
LOC_Os04g59020OsAffx.26662.1.S1_x_at11/114+34892400..34893173Integral membrane protein, expressed
LOC_Os04g59020OsAffx.26662.1.S1_at11/114+34892400..34893173Integral membrane protein, expressed
LOC_Os04g59020Os.27945.1.A1_at9/114+34892400..34893173Integral membrane protein, expressed
LOC_Os04g59030OsAffx.28370.3.S1_at10/114+34895772..34897039hypothetical protein
LOC_Os04g59030OsAffx.28370.1.S1_at5/114+34895772..34897039hypothetical protein
LOC_Os04g59030OsAffx.28370.1.S1_x_at2/114+34895772..34897039hypothetical protein
LOC_Os04g59040Os.9831.1.S1_at10/114+34901612..34905046Soluble inorganic pyrophosphatase, putative, expressed
LOC_Os04g59050Os.51110.1.S1_at11/114+34907912..34909325expressed protein
LOC_Os04g59050OsAffx.18607.1.S1_x_at1/114+34907912..34909325expressed protein
LOC_Os04g59060Os.18273.1.S1_at11/114+34909581..34913534DnaJ domain containing protein, expressed
LOC_Os04g59060OsAffx.30143.1.S1_at1/114+34909581..34913534DnaJ domain containing protein, expressed
LOC_Os04g59080OsAffx.22699.1.S1_x_at2/114+34919958..34925933retrotransposon protein, putative, unclassified
LOC_Os04g59090NANA4+34926037..34928183hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0008152biological_processmetabolism
GO:0005634cellular_componentnucleus
GO:0005737cellular_componentcytoplasm
GO:0016020cellular_componentmembrane
GO:0016462molecular_functionpyrophosphatase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9831.1.S1_at--666--951Chr04:34902512..34902536 (25 bp)
AGGAGCCTGTTATTCCTGGTTCCTT
LOC_Os04g59040
Os.9831.1.S1_at--912--6691Chr04:34902494..34902518 (25 bp)
GTTCCTTCCTCCGTGCTAGAGCAAT
LOC_Os04g59040
Os.9831.1.S1_at--321--4851Chr04:34902480..34902504 (25 bp)
GCTAGAGCAATTGGCCTTATGCCCA
LOC_Os04g59040
Os.9831.1.S1_at--688--8431Chr04:34902468..34902492 (25 bp)
GGCCTTATGCCCATGATTGACCAGG
LOC_Os04g59040
Os.9831.1.S1_at--363--1331Chr04:34902243..34902267 (25 bp)
AGAGATTAAACGCTTCTTTGAAGAC
LOC_Os04g59040
Os.9831.1.S1_at--652--7371NONE
GTGACGCCATTCAGTACTCCATGGA
NONE
Os.9831.1.S1_at--174--1131Chr04:34901860..34901884 (25 bp)
AGTGCTACCCGATCTTTATCGTGAA
LOC_Os04g59040
Os.9831.1.S1_at--653--1951Chr04:34901809..34901833 (25 bp)
ACTGGAGTAGAGACTTTGTTCACAA
LOC_Os04g59040
Os.9831.1.S1_at--122--10271Chr04:34901670..34901694 (25 bp)
TTTGTTCTGTGTCATGCTTCTGTCC
LOC_Os04g59040
Os.9831.1.S1_at--610--9311Chr04:34901648..34901672 (25 bp)
TCCCTCCGGATCGTTTATTGACATG
LOC_Os04g59040
Os.9831.1.S1_at--1080--5651Chr04:34901629..34901653 (25 bp)
GACATGAATTACTGTTCTTGTTATA
LOC_Os04g59040
Target Sequence 
AGGAGCCTGTTATTCCTGGTTCCTTCCTCCGTGCTAGAGCAATTGGCCTTATGCCCATGATTGACCAGGGTGAGAAGGAT
GACAAGATAATAGCAGTATGTGCTGATGATCCTGAATACCGTCATTACAATGACATCAGTGAGCTGTCTCCTCACCGCCT
CCAAGAGATTAAACGCTTCTTTGAAGACTACAAGAAGAATGAGAACAAGGAGGTTGCTGTTGATGCATTCTTGCCTGCCA
ACACTGCTCGTGACGCCATTCAGTACTCCATGGACCTGTATGCGCNAATATATCTTGCAAAGCTTGAGGCAGTAGAGTGC
TACCCGATCTTTATCGTGAAAATATTGTATTTGTGCCAACTGCAAAACTGGAGTAGAGACTTTGTTCACAAAAATGGAGT
GCTATGGGGCTGGCTATGATTTCCTTTACCCTCCAGCTGTGTATCAATTTGCATGTGGTTTCATACTTACAAATTATGAA
TAAGTGAAGTTTGGGCAGACATGAATTTGTTCTGTGTCATGCTTCTGTCCCTCCGGATCGTTTATTGACATGAATTACTG
TTCTTGTTATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9831.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis