Browse Element(s) Details


Os.18273.1.S1_at

Description gb:AK060617.1
DB_XREF= gi:32970635
TID=Os.18273.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.18273 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-026-B11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-026-B11, full insert sequence.
FL= gb:AK060617.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5906011/11DnaJ domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g59010Os.49725.1.S1_at6/114+34886434..34887682Kelch motif family protein, expressed
LOC_Os04g59020Os.27945.1.A1_x_at11/114+34892400..34893173Integral membrane protein, expressed
LOC_Os04g59020OsAffx.26662.1.S1_x_at11/114+34892400..34893173Integral membrane protein, expressed
LOC_Os04g59020OsAffx.26662.1.S1_at11/114+34892400..34893173Integral membrane protein, expressed
LOC_Os04g59020Os.27945.1.A1_at9/114+34892400..34893173Integral membrane protein, expressed
LOC_Os04g59030OsAffx.28370.3.S1_at10/114+34895772..34897039hypothetical protein
LOC_Os04g59030OsAffx.28370.1.S1_at5/114+34895772..34897039hypothetical protein
LOC_Os04g59030OsAffx.28370.1.S1_x_at2/114+34895772..34897039hypothetical protein
LOC_Os04g59040Os.9831.1.S1_at10/114+34901612..34905046Soluble inorganic pyrophosphatase, putative, expressed
LOC_Os04g59050Os.51110.1.S1_at11/114+34907912..34909325expressed protein
LOC_Os04g59050OsAffx.18607.1.S1_x_at1/114+34907912..34909325expressed protein
LOC_Os04g59060Os.18273.1.S1_at11/114+34909581..34913534DnaJ domain containing protein, expressed
LOC_Os04g59060OsAffx.30143.1.S1_at1/114+34909581..34913534DnaJ domain containing protein, expressed
LOC_Os04g59080OsAffx.22699.1.S1_x_at2/114+34919958..34925933retrotransposon protein, putative, unclassified
LOC_Os04g59090NANA4+34926037..34928183hypothetical protein
LOC_Os04g59100NANA4+34937582..34943165retrotransposon protein, putative, unclassified

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006457biological_processprotein folding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.18273.1.S1_at--36--2171Chr04:34910375..34910399 (25 bp)
ACACCGGGCTATTCTTGGACTACCA
LOC_Os04g59060
Os.18273.1.S1_at--437--8131Chr04:34910359..34910383 (25 bp)
GGACTACCAGCTTGTGGTCCACTAA
LOC_Os04g59060
Os.18273.1.S1_at--213--7791Chr04:34910344..34910368 (25 bp)
GGTCCACTAACTCTAGATGCTGTCA
LOC_Os04g59060
Os.18273.1.S1_at--403--9711Chr04:34910203..34910346 (25 bp)
TCAAAACTGCTTTCCGGGCATCTGC
LOC_Os04g59060
Os.18273.1.S1_at--116--6831Chr04:34909949..34909973 (25 bp)
GTTTAAGCTTTGTGTCAACGCATAC
LOC_Os04g59060
Os.18273.1.S1_at--557--9011Chr04:34909915..34909939 (25 bp)
TGCAATGTCCTCAAGGCTGCTTAGC
LOC_Os04g59060
Os.18273.1.S1_at--974--10451Chr04:34909895..34909919 (25 bp)
TTAGCTTTCCTCTTGCATCGATGGT
LOC_Os04g59060
Os.18273.1.S1_at--356--3551Chr04:34909880..34909904 (25 bp)
CATCGATGGTGGTTCAAGCTTGCAG
LOC_Os04g59060
Os.18273.1.S1_at--515--3631Chr04:34909862..34909886 (25 bp)
CTTGCAGTTGCTGGAGGCTGTGAAC
LOC_Os04g59060
Os.18273.1.S1_at--627--4771Chr04:34909788..34909812 (25 bp)
GCTGCTGCATTGTTTCAGAGCATCA
LOC_Os04g59060
Os.18273.1.S1_at--189--6532Chr08:25075652..25075671 (20 bp)
GATTTGATTTCCTATTCCTTGAGCG
NONE
Target Sequence 
ACACCGGGCTATTCTTGGACTACCAGCTTGTGGTCCACTAACTCTAGATGCTGTCAAAACTGCTTTCCGGGCATCTGCTC
TGAGGTGGCACCCTGACAAGCACCCAGGCTCATCACAGGCCGTGGCCGAAGAGAAGTTTAAGCTTTGTGTCAACGCATAC
AATTCTNTCTGCAATGTCCTCAAGGCTGCTTAGCTTTCCTCTTGCATCGATGGTGGTTCAAGCTTGCAGTTGCTGGAGGC
TGTGAACTCGCAGCAACAGCATTNCAAGGCTTGTAGCTGACAAGGCCAAGCATGAAGCTGCTGCATTGTTTCAGAGCATC
AATCGGATGACACATTCAGTTCACCAACTCACCAAGCTCAGAGAAGGAAGGGGATTTGTGCTGTTGTAACAAACATGTAC
GTACTACTAATCACTGTAACAAACATCTATTCCTTCATTTGATTTGATTTCCTATTCCTTGAGCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.18273.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis